RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1249535", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1249535 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30673886 30673886 PRJNA1249535_S_NODE_164553_length_326_cov_3.391304_g161170_i0 PRJNA1249535 164553 326 3.391304 11.05565104 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 43.9 0.0375   NR HEX7509963.1 2663014 g161170 i0 42 0.460122699386503 50 27 46 1 296 147 433 480 HEX7509963.1 glycoside hydrolase family 3 N-terminal domain-containing protein [Chitinivibrionales bacterium] diamond 150 43.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium
31021574 31021574 PRJNA1249535_S_NODE_12015_length_781_cov_9.005650_g9474_i0 PRJNA1249535 12015 781 9.00565 70.3341265 Fibrobacteraceae bacterium 2652288 Bacteria Bacteria 61.6 1.75e-7   NR HSQ41887.1 2652288 g9474 i0 44.9 0.299615877080666 78 34 26.5 1 776 570 55 132 HSQ41887.1 ATP-dependent Clp protease proteolytic subunit [Fibrobacteraceae bacterium] diamond 234 61.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae   Fibrobacteraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;