RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA1249535", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 9 ✖

tax_clade 1

  • Discoba · 9 ✖

bioproject 1

  • PRJNA1249535 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
356972 356972 PRJNA1249535_S_NODE_255981_length_277_cov_1.147059_g252598_i0 PRJNA1249535 255981 277 1.147059 3.17735343 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 52.8 0.025   NTclustered gi|2787711021|ref|XM_067338658.1| 715481 g252598 i0 96.774 0.111913357400722 31 1 11 0 72 102 978 1008 Trypanosoma melophagium uncharacterized protein (LSM04_008726), partial mRNA blastn 31 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
1052509 1052509 PRJNA1249535_S_NODE_53761_length_465_cov_3.686224_g50405_i0 PRJNA1249535 53761 465 3.686224 17.1409416 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.045   NTclustered gi|2305973577|gb|OK136185.1| 96781 g50405 i0 100 0.120430107526882 28 0 6 0 160 187 57014 57041 Eutreptiella sp. CCMP389 chloroplast, complete genome blastn 56 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Eutreptiales Eutreptiaceae Eutreptiella Eutreptiella sp. CCMP389
1633430 1633430 PRJNA1249535_S_NODE_60222_length_445_cov_3.819892_g56853_i0 PRJNA1249535 60222 445 3.819892 16.9985194 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 54.7 0.012   NTclustered gi|1624743983|ref|XM_029022920.1| 67003 g56853 i0 100 0.0651685393258427 29 0 7 0 217 245 2204 2176 Trypanosoma theileri uncharacterized protein (TM35_000052650), partial mRNA blastn 29 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
6733158 6733158 PRJNA1249535_S_NODE_127466_length_350_cov_11.288809_g124083_i0 PRJNA1249535 127466 350 11.288809 39.5108315 Phacus pleuronectes 102908 Euglenozoa other_Eukaryota 52.8 0.033   NTclustered gi|1526689943|ref|NC_039927.1| 102908 g124083 i0 100 0.08 28 0 8 0 141 168 29970 29943 Phacus pleuronectes voucher SAG 1261-3b chloroplast, complete genome blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Phacaceae Phacus Phacus pleuronectes
13805868 13805868 PRJNA1249535_S_NODE_202551_length_305_cov_2.017241_g199168_i0 PRJNA1249535 202551 305 2.017241 6.15258505 Leishmania 5658 Euglenozoa other_Eukaryota 228 4.4e-55   NTclustered gi|5019758|gb|AF115465.1| 5661 g199168 i0 95.775 49.5049180327869 142 5 46 1 164 304 1314 1455 Leishmania donovani 28S ribosomal RNA subunit beta gene, partial sequence; 28S ribosomal RNA subunits delta, zeta, and epsilon genes, complete sequence blastn 15099 228 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania donovani
22034519 22034519 PRJNA1249535_S_NODE_320198_length_242_cov_2.769231_g316815_i0 PRJNA1249535 320198 242 2.769231 6.70153902 Trypanosoma brucei 5691 Euglenozoa other_Eukaryota 60.2 1.3e-4   NTclustered gi|62359161|gb|AC007864.5| 5691 g316815 i0 100 2.56611570247934 32 0 13 0 163 194 64422 64391 Trypanosoma brucei chromosome 2 clone RPCI93-28H13, complete sequence blastn 621 60.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
29662723 29662723 PRJNA1249535_S_NODE_203110_length_304_cov_5.701299_g199727_i0 PRJNA1249535 203110 304 5.701299 17.33194896 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 58.9 9.72e-8   NR KAJ9435998.1 91374 g199727 i0 42.2 1.63815789473684 83 45 81.9 3 2 250 167 246 KAJ9435998.1 hypothetical protein DIPPA_34462 [Diplonema papillatum] diamond 498 58.9 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
30832008 30832008 PRJNA1249535_S_NODE_342954_length_210_cov_4.153285_g339571_i0 PRJNA1249535 342954 210 4.153285 8.7218985 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 41.6 0.0458   NR XP_029231586.1 83891 g339571 i0 37.3 0.842857142857143 59 36 84.3 1 30 206 31 88 XP_029231586.1 uncharacterized protein Tco025E_01241 [Trypanosoma conorhini] diamond 177 41.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
31496046 31496046 PRJNA1249535_S_NODE_296256_length_255_cov_1.285714_g292873_i0 PRJNA1249535 296256 255 1.285714 3.2785707 Phytomonas sp. EM1 479712 Euglenozoa other_Eukaryota 44.3 0.0126   NR CCW60050.1 479712 g292873 i0 33.8 0.905882352941176 77 49 90.6 1 23 253 1173 1247 CCW60050.1 unnamed protein product [Phytomonas sp. EM1] diamond 231 44.3 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. EM1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;