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contig_metadata

11 rows where bioproject = "PRJNA1249042" and tax_superkingdom = "Archaea"

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tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Archaea · 11 ✖

bioproject 1

  • PRJNA1249042 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2905510 2905510 PRJNA1249042_S_NODE_74123_length_183_cov_2.835714_g73909_i0 PRJNA1249042 74123 183 2.835714 5.18935662 Methanobrevibacter millerae 230361 Archaea Archaea 231 1.87e-56   NTclustered gi|968564921|gb|CP011266.1| 230361 g73909 i0 89.56 4.90710382513661 182 19 99 0 1 182 588948 589129 Methanobrevibacter millerae strain SM9, complete genome blastn 898 231 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
2905542 2905542 PRJNA1249042_S_NODE_78663_length_179_cov_2.073529_g78449_i0 PRJNA1249042 78663 179 2.073529 3.71161691 Methanosalsum zhilinae 39669 Archaea Archaea 56.5 0.001   NTclustered gi|335929340|gb|CP002101.1| 679901 g78449 i0 100 0.167597765363128 30 0 17 0 93 122 1665167 1665138 Methanosalsum zhilinae DSM 4017, complete genome blastn 30 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosalsum Methanosalsum zhilinae
10558715 10558715 PRJNA1249042_S_NODE_56429_length_202_cov_2.069182_g56215_i0 PRJNA1249042 56429 202 2.069182 4.17974764 Methanobrevibacter millerae 230361 Archaea Archaea 285 1.59e-72   NTclustered gi|968564921|gb|CP011266.1| 230361 g56215 i0 92.079 5 202 16 100 0 1 202 80396 80195 Methanobrevibacter millerae strain SM9, complete genome blastn 1010 285 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
26693727 26693727 PRJNA1249042_S_NODE_93281_length_166_cov_3.040650_g93067_i0 PRJNA1249042 93281 166 3.04065 5.047479 Methanobacterium subterraneum 59277 Archaea Archaea 41.2 0.044   NR WP_100905497.1 59277 g93067 i0 43.6 0.704819277108434 39 22 70.5 0 6 122 88 126 WP_100905497.1 Fpg/Nei family DNA glycosylase [Methanobacterium subterraneum] diamond 117 41.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium subterraneum
26852375 26852375 PRJNA1249042_S_NODE_110341_length_154_cov_1.729730_g110127_i0 PRJNA1249042 110341 154 1.72973 2.6637842 Methanobrevibacter sp. 66852 Archaea Archaea 106 1.67e-27   NR MDO5827389.1 66852 g110127 i0 100 0.993506493506494 51 0 99.4 0 1 153 10 60 MDO5827389.1 TIGR00295 family protein [Methanobrevibacter sp.] diamond 153 106 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28684426 28684426 PRJNA1249042_S_NODE_32087_length_237_cov_2.664948_g31873_i0 PRJNA1249042 32087 237 2.664948 6.31592676 Candidatus Nitrosocosmicus arcticus 2035267 Archaea Archaea 166 5.78e-49   NR WP_144732451.1 2035267 g31873 i0 98.7 0.987341772151899 78 1 98.7 0 235 2 190 267 WP_144732451.1 DUF72 domain-containing protein [Candidatus Nitrosocosmicus arcticus] diamond 234 166 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus arcticus
29347423 29347423 PRJNA1249042_S_NODE_99849_length_161_cov_2.847458_g99635_i0 PRJNA1249042 99849 161 2.847458 4.58440738 Methanomicrobiales archaeon 2184052 Archaea Archaea 40.8 0.0213   NR MCX6694254.1 2184052 g99635 i0 46.2 0.726708074534162 39 18 67.1 1 37 144 65 103 MCX6694254.1 ribonuclease P [Methanomicrobiales archaeon] diamond 117 40.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales     Methanomicrobiales archaeon
29662659 29662659 PRJNA1249042_S_NODE_112030_length_153_cov_1.700000_g111816_i0 PRJNA1249042 112030 153 1.7 2.601 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 42.4 0.0149   NR MDW0181425.1 2169593 g111816 i0 47.2 4.72549019607843 36 19 70.6 0 45 152 660 695 MDW0181425.1 reverse transcriptase domain-containing protein [Nitrososphaeraceae archaeon] diamond 723 42.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
31875158 31875158 PRJNA1249042_S_NODE_19477_length_266_cov_1.663677_g19263_i0 PRJNA1249042 19477 266 1.663677 4.42538082 Thermoplasmatota archaeon 2806419 Archaea Archaea 43.1 0.0352   NR MDQ1372472.1 2806419 g19263 i0 43.6 0.620300751879699 55 24 56.4 2 237 88 286 338 MDQ1372472.1 transporter ATP-binding protein [Thermoplasmatota archaeon] diamond 165 43.1 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
32033559 32033559 PRJNA1249042_S_NODE_9818_length_310_cov_3.142322_g9604_i0 PRJNA1249042 9818 310 3.142322 9.7411982 Halobacteria archaeon AArc-dxtr1 2979987 Archaea Archaea 42.4 0.0161   NR MCU4926469.1 2979987 g9604 i0 46.5 0.416129032258065 43 22 41.6 1 132 260 26 67 MCU4926469.1 MarR family transcriptional regulator [Halobacteria archaeon AArc-dxtr1] diamond 129 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria       Halobacteria archaeon AArc-dxtr1
32476650 32476650 PRJNA1249042_S_NODE_15759_length_278_cov_4.000000_g15545_i0 PRJNA1249042 15759 278 4 11.12 archaeon 1906665 Archaea Archaea 55.1 2.69e-6   NR MCQ2815673.1 1906665 g15545 i0 35 1.07913669064748 100 46 87.4 1 35 277 1215 1314 MCQ2815673.1 DEAD/DEAH box helicase [archaeon] diamond 300 55.1 1 Archaea               archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;