RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1249042" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249042 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1629222 1629222 PRJNA1249042_S_NODE_37222_length_228_cov_3.048649_g37008_i0 PRJNA1249042 37222 228 3.048649 6.95091972 Maridesulfovibrio sp. 2795000 Bacteria Bacteria 52.8 0.02   NTclustered gi|2621785158|emb|OY781616.1| 2795000 g37008 i0 100 0.12280701754386 28 0 12 0 185 212 946982 946955 MAG: Maridesulfovibrio sp. isolate 7570950b-8a73-422e-b528-09704edcd613 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio sp.
15657174 15657174 PRJNA1249042_S_NODE_13653_length_287_cov_3.618852_g13439_i0 PRJNA1249042 13653 287 3.618852 10.38610524 Desulfarculia bacterium 3065862 Bacteria Bacteria 204 6.919999999999999e-48   NTclustered gi|2621702698|emb|OY759590.1| 3065862 g13439 i0 84.689 140.543554006969 209 27 72 5 78 285 335762 335558 MAG: Desulfarculia bacterium isolate 49400898-fc5b-42b7-bef8-a303f8702bb8 genome assembly, chromosome: 1 blastn 40336 204 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia       Desulfarculia bacterium
26820673 26820673 PRJNA1249042_S_NODE_34261_length_233_cov_3.036842_g34047_i0 PRJNA1249042 34261 233 3.036842 7.07584186 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 43.5 0.0138   NR GJM17366.1 2202153 g34047 i0 34.8 0.849785407725322 66 43 85 0 227 30 2 67 GJM17366.1 MAG: hypothetical protein DHS20C13_26930 [Thermodesulfobacteriota bacterium] diamond 198 43.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
27547571 27547571 PRJNA1249042_S_NODE_116004_length_151_cov_0.888889_g115790_i0 PRJNA1249042 116004 151 0.888889 1.34222239 Desulfobacter hydrogenophilus 2291 Bacteria Bacteria 99.4 1.0499999999999999e-23   NR WP_111960685.1 2291 g115790 i0 98 0.993377483443709 50 1 99.3 0 151 2 137 186 WP_111960685.1 SHOCT domain-containing protein [Desulfobacter hydrogenophilus] diamond 150 99.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter hydrogenophilus
28305357 28305357 PRJNA1249042_S_NODE_7406_length_334_cov_2.522337_g7192_i0 PRJNA1249042 7406 334 2.522337 8.42460558 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 42.7 0.0438   NR RJQ84504.1 2049433 g7192 i0 37.7 0.476047904191617 53 33 47.6 0 302 144 3 55 RJQ84504.1 MAG: YcgN family cysteine cluster protein [Desulfobacteraceae bacterium] diamond 159 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
29378904 29378904 PRJNA1249042_S_NODE_28689_length_244_cov_2.084577_g28475_i0 PRJNA1249042 28689 244 2.084577 5.08636788 Trichloromonas sp. 3069249 Bacteria Bacteria 42.7 0.0387   NR MDX9708327.1 3069249 g28475 i0 35.1 0.700819672131147 57 37 70.1 0 171 1 803 859 MDX9708327.1 response regulator [Trichloromonas sp.] diamond 171 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Trichloromonadaceae Trichloromonas Trichloromonas sp.
29978877 29978877 PRJNA1249042_S_NODE_55551_length_203_cov_2.350000_g55337_i0 PRJNA1249042 55551 203 2.35 4.7705 Mailhella sp. 1981029 Bacteria Bacteria 130 2.71e-36   NR MBO4318236.1 1981029 g55337 i0 86.6 0.990147783251232 67 9 99 0 203 3 19 85 MBO4318236.1 ABC transporter ATP-binding protein [Mailhella sp.] diamond 201 130 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Mailhella Mailhella sp.
31970191 31970191 PRJNA1249042_S_NODE_86138_length_172_cov_3.131783_g85924_i0 PRJNA1249042 86138 172 3.131783 5.38666676 Desulfovibrio sp. 885 Bacteria Bacteria 108 4.91e-26   NR MBQ2515633.1 885 g85924 i0 91.2 0.994186046511628 57 5 99.4 0 172 2 350 406 MBQ2515633.1 DNA polymerase [Desulfovibrio sp.] diamond 171 108 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
32065104 32065104 PRJNA1249042_S_NODE_24018_length_254_cov_2.004739_g23804_i0 PRJNA1249042 24018 254 2.004739 5.09203706 Smithellaceae bacterium 2964540 Bacteria Bacteria 138 5.71e-40   NR HLZ18954.1 2964540 g23804 i0 76.2 2.97637795275591 84 20 99.2 0 252 1 14 97 HLZ18954.1 GNAT family N-acetyltransferase [Smithellaceae bacterium] diamond 756 138 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae   Smithellaceae bacterium
32318600 32318600 PRJNA1249042_S_NODE_28259_length_245_cov_1.628713_g28045_i0 PRJNA1249042 28259 245 1.628713 3.99034685 Desulfobacter sp. 2294 Bacteria Bacteria 42.4 0.0389   NR WDP88703.1 2294 g28045 i0 35.1 0.697959183673469 57 35 69.8 1 234 64 86 140 WDP88703.1 MAG: hypothetical protein HUN04_02700 [Desulfobacter sp.] diamond 171 42.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;