RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1249042", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249042 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28684426 28684426 PRJNA1249042_S_NODE_32087_length_237_cov_2.664948_g31873_i0 PRJNA1249042 32087 237 2.664948 6.31592676 Candidatus Nitrosocosmicus arcticus 2035267 Archaea Archaea 166 5.78e-49   NR WP_144732451.1 2035267 g31873 i0 98.7 0.987341772151899 78 1 98.7 0 235 2 190 267 WP_144732451.1 DUF72 domain-containing protein [Candidatus Nitrosocosmicus arcticus] diamond 234 166 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus arcticus
29662659 29662659 PRJNA1249042_S_NODE_112030_length_153_cov_1.700000_g111816_i0 PRJNA1249042 112030 153 1.7 2.601 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 42.4 0.0149   NR MDW0181425.1 2169593 g111816 i0 47.2 4.72549019607843 36 19 70.6 0 45 152 660 695 MDW0181425.1 reverse transcriptase domain-containing protein [Nitrososphaeraceae archaeon] diamond 723 42.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;