RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1249042", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1249042 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10558682 10558682 PRJNA1249042_S_NODE_52209_length_207_cov_2.341463_g51995_i0 PRJNA1249042 52209 207 2.341463 4.84682841 Spizellomyces punctatus 109760 Fungi Fungi 122 1.36e-23   NTclustered gi|1026980695|ref|XM_016752422.1| 645134 g51995 i0 83.088 53.6425120772947 136 21 65 2 39 173 523 657 Spizellomyces punctatus DAOM BR117 uncharacterized protein (SPPG_04176), mRNA blastn 11104 122 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
16931830 16931830 PRJNA1249042_S_NODE_53574_length_205_cov_5.333333_g53360_i0 PRJNA1249042 53574 205 5.333333 10.93333265 Fimicolochytrium jonesii 1396493 Fungi Fungi 104 4.87e-18   NTclustered gi|2432097441|ref|XM_053068119.1| 1396493 g53360 i0 82.114 3.25365853658537 123 20 60 2 29 150 392 271 Fimicolochytrium jonesii ribosomal protein S8 (EV422DRAFT_500152), partial mRNA blastn 667 104 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
19480915 19480915 PRJNA1249042_S_NODE_84676_length_174_cov_1.076336_g84462_i0 PRJNA1249042 84676 174 1.076336 1.87282464 Spizellomyces punctatus 109760 Fungi Fungi 56.5 0.001   NTclustered gi|1026974961|ref|XM_016751924.1| 645134 g84462 i0 100 0.172413793103448 30 0 17 0 105 134 1157 1186 Spizellomyces punctatus DAOM BR117 uncharacterized protein (SPPG_03663), mRNA blastn 30 56.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;