RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1249042" and tax_clade = "Stenosarchaea group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA1249042 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2905542 2905542 PRJNA1249042_S_NODE_78663_length_179_cov_2.073529_g78449_i0 PRJNA1249042 78663 179 2.073529 3.71161691 Methanosalsum zhilinae 39669 Archaea Archaea 56.5 0.001   NTclustered gi|335929340|gb|CP002101.1| 679901 g78449 i0 100 0.167597765363128 30 0 17 0 93 122 1665167 1665138 Methanosalsum zhilinae DSM 4017, complete genome blastn 30 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosalsum Methanosalsum zhilinae
29347423 29347423 PRJNA1249042_S_NODE_99849_length_161_cov_2.847458_g99635_i0 PRJNA1249042 99849 161 2.847458 4.58440738 Methanomicrobiales archaeon 2184052 Archaea Archaea 40.8 0.0213   NR MCX6694254.1 2184052 g99635 i0 46.2 0.726708074534162 39 18 67.1 1 37 144 65 103 MCX6694254.1 ribonuclease P [Methanomicrobiales archaeon] diamond 117 40.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales     Methanomicrobiales archaeon
32033559 32033559 PRJNA1249042_S_NODE_9818_length_310_cov_3.142322_g9604_i0 PRJNA1249042 9818 310 3.142322 9.7411982 Halobacteria archaeon AArc-dxtr1 2979987 Archaea Archaea 42.4 0.0161   NR MCU4926469.1 2979987 g9604 i0 46.5 0.416129032258065 43 22 41.6 1 132 260 26 67 MCU4926469.1 MarR family transcriptional regulator [Halobacteria archaeon AArc-dxtr1] diamond 129 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria       Halobacteria archaeon AArc-dxtr1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;