RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1249042", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA1249042 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17629993 17629993 PRJNA1249042_S_NODE_42534_length_220_cov_2.322034_g42320_i0 PRJNA1249042 42534 220 2.322034 5.1084748 Akkermansia 239934 Bacteria Bacteria 213 8.44e-51   NTclustered gi|1888387165|gb|CP058562.1| 239935 g42320 i0 84.234 298.690909090909 222 31 100 4 1 220 139100 139319 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 65712 213 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
24580498 24580498 PRJNA1249042_S_NODE_101920_length_160_cov_1.598291_g101706_i0 PRJNA1249042 101920 160 1.598291 2.5572656 Opitutia bacterium KCR 482 3034326 Bacteria Bacteria 291 2.5799999999999998e-74   NTclustered gi|2707273910|gb|CP149973.1| 3034326 g101706 i0 99.375 1 160 1 100 0 1 160 2274798 2274957 Opitutia bacterium KCR 482 chromosome, complete genome blastn 160 291 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium KCR 482
27326556 27326556 PRJNA1249042_S_NODE_13763_length_287_cov_2.118852_g13549_i0 PRJNA1249042 13763 287 2.118852 6.08110524 Puniceicoccus vermicola 388746 Bacteria Bacteria 42 0.021   NR WP_185691218.1 388746 g13549 i0 31.9 0.721254355400697 69 45 70 1 265 65 4 72 WP_185691218.1 hypothetical protein [Puniceicoccus vermicola] diamond 207 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Puniceicoccaceae Puniceicoccus Puniceicoccus vermicola
27705855 27705855 PRJNA1249042_S_NODE_86484_length_172_cov_2.131783_g86270_i0 PRJNA1249042 86484 172 2.131783 3.66666676 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 41.6 0.0363   NR MBE2204806.1 2201154 g86270 i0 37.5 0.837209302325581 48 30 83.7 0 3 146 57 104 MBE2204806.1 hypothetical protein [Chthoniobacterales bacterium] diamond 144 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
28368404 28368404 PRJNA1249042_S_NODE_30106_length_241_cov_2.444444_g29892_i0 PRJNA1249042 30106 241 2.444444 5.89111004 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 40.8 0.021   NR MDB6030368.1 2026801 g29892 i0 44 0.622406639004149 50 28 62.2 0 31 180 8 57 MDB6030368.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 150 40.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28968511 28968511 PRJNA1249042_S_NODE_12668_length_292_cov_2.377510_g12454_i0 PRJNA1249042 12668 292 2.37751 6.9423292 Opitutaceae bacterium 2006848 Bacteria Bacteria 44.7 0.0146   NR HZZ57448.1 2006848 g12454 i0 46.5 0.441780821917808 43 23 44.2 0 286 158 200 242 HZZ57448.1 chemotaxis protein CheB [Opitutaceae bacterium] diamond 129 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29347404 29347404 PRJNA1249042_S_NODE_114269_length_152_cov_0.880734_g114055_i0 PRJNA1249042 114269 152 0.880734 1.33871568 Opitutales bacterium 2026772 Bacteria Bacteria 42.7 0.0107   NR MDP4644994.1 2026772 g114055 i0 37.3 1.00657894736842 51 28 92.8 1 10 150 213 263 MDP4644994.1 glycosyltransferase [Opitutales bacterium] diamond 153 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;