RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1249042", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1249042 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16931904 16931904 PRJNA1249042_S_NODE_62774_length_195_cov_1.585526_g62560_i0 PRJNA1249042 62774 195 1.585526 3.0917757 Rhabdochlamydiaceae symbiont of Dictyostelium giganteum 3342349 Bacteria Bacteria 52.8 0.017   NTclustered gi|2851290179|emb|OZ197277.1| 3342349 g62560 i0 100 0.143589743589744 28 0 14 0 93 120 914390 914417 Rhabdochlamydiaceae symbiont of Dictyostelium giganteum strain Digiganteum-PALH genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae symbiont of Dictyostelium giganteum
31210597 31210597 PRJNA1249042_S_NODE_8295_length_324_cov_1.967972_g8081_i0 PRJNA1249042 8295 324 1.967972 6.3762292800000004 Chlamydia trachomatis 813 Bacteria Bacteria 43.9 0.00958   NR CRH75139.1 813 g8081 i0 44.3 0.564814814814815 61 34 56.5 0 64 246 54 114 CRH75139.1 Uncharacterised protein [Chlamydia trachomatis] diamond 183 43.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;