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contig_metadata

24 rows where bioproject = "PRJNA1249042", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 24 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 24 ✖

bioproject 1

  • PRJNA1249042 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
354110 354110 PRJNA1249042_S_NODE_13881_length_286_cov_3.349794_g13667_i0 PRJNA1249042 13881 286 3.349794 9.58041084 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g13667 i0 100 0.0979020979020979 28 0 10 0 259 286 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
354349 354349 PRJNA1249042_S_NODE_41541_length_222_cov_1.290503_g41327_i0 PRJNA1249042 41541 222 1.290503 2.86491666 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g41327 i0 100 0.126126126126126 28 0 13 0 195 222 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
354410 354410 PRJNA1249042_S_NODE_48821_length_211_cov_3.392857_g48607_i0 PRJNA1249042 48821 211 3.392857 7.15892827 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.019   NTclustered gi|1557394408|emb|LR031564.1| 45931 g48607 i0 100 0.132701421800948 28 0 13 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
354597 354597 PRJNA1249042_S_NODE_70141_length_187_cov_2.284722_g69927_i0 PRJNA1249042 70141 187 2.284722 4.27243014 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.004   NTclustered gi|1557394408|emb|LR031564.1| 45931 g69927 i0 100 0.155080213903743 29 0 16 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
1629218 1629218 PRJNA1249042_S_NODE_36802_length_229_cov_2.064516_g36588_i0 PRJNA1249042 36802 229 2.064516 4.72774164 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g36588 i0 100 0.122270742358079 28 0 12 0 202 229 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
1629486 1629486 PRJNA1249042_S_NODE_67562_length_190_cov_1.598639_g67348_i0 PRJNA1249042 67562 190 1.598639 3.0374141 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.001   NTclustered gi|1557394408|emb|LR031564.1| 45931 g67348 i0 100 0.157894736842105 30 0 16 0 161 190 52 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
1629597 1629597 PRJNA1249042_S_NODE_81102_length_177_cov_1.432836_g80888_i0 PRJNA1249042 81102 177 1.432836 2.53611972 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.015   NTclustered gi|1557394408|emb|LR031564.1| 45931 g80888 i0 100 0.15819209039548 28 0 16 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
2905384 2905384 PRJNA1249042_S_NODE_56783_length_202_cov_0.955975_g56569_i0 PRJNA1249042 56783 202 0.955975 1.9310695 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g56569 i0 100 0.138613861386139 28 0 14 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
4181494 4181494 PRJNA1249042_S_NODE_23224_length_256_cov_1.323944_g23010_i0 PRJNA1249042 23224 256 1.323944 3.38929664 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g23010 i0 100 0.109375 28 0 11 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
5458008 5458008 PRJNA1249042_S_NODE_56005_length_203_cov_0.881250_g55791_i0 PRJNA1249042 56005 203 0.88125 1.7889375 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g55791 i0 100 0.137931034482759 28 0 14 0 176 203 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
9282957 9282957 PRJNA1249042_S_NODE_69888_length_187_cov_3.541667_g69674_i0 PRJNA1249042 69888 187 3.541667 6.62291729 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g69674 i0 100 0.149732620320856 28 0 15 0 160 187 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
10558294 10558294 PRJNA1249042_S_NODE_10849_length_302_cov_4.563707_g10635_i0 PRJNA1249042 10849 302 4.563707 13.78239514 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.028   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10635 i0 100 0.0927152317880795 28 0 9 0 275 302 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
11255607 11255607 PRJNA1249042_S_NODE_52029_length_207_cov_3.176829_g51815_i0 PRJNA1249042 52029 207 3.176829 6.57603603 Metazoa 33208 Nematoda Nematoda 52.8 0.018   NTclustered gi|1376140309|ref|XM_024650480.1| 34506 g51815 i0 100 0.405797101449275 28 0 14 0 22 49 1006 1033 Strongyloides ratti Sterol-sensing domain and Patched family-containing protein (SRAE_1000330500), partial mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
11832725 11832725 PRJNA1249042_S_NODE_10090_length_308_cov_2.505660_g9876_i0 PRJNA1249042 10090 308 2.50566 7.7174328 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.029   NTclustered gi|1557394408|emb|LR031564.1| 45931 g9876 i0 100 0.0909090909090909 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13108638 13108638 PRJNA1249042_S_NODE_75671_length_182_cov_1.625899_g75457_i0 PRJNA1249042 75671 182 1.625899 2.95913618 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.001   NTclustered gi|1557394408|emb|LR031564.1| 45931 g75457 i0 100 0.164835164835165 30 0 16 0 153 182 54 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14383763 14383763 PRJNA1249042_S_NODE_62892_length_195_cov_1.394737_g62678_i0 PRJNA1249042 62892 195 1.394737 2.71973715 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.005   NTclustered gi|1557394408|emb|LR031564.1| 45931 g62678 i0 100 0.148717948717949 29 0 15 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
15657590 15657590 PRJNA1249042_S_NODE_66413_length_191_cov_2.081081_g66199_i0 PRJNA1249042 66413 191 2.081081 3.97486471 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g66199 i0 100 0.146596858638743 28 0 15 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
16931711 16931711 PRJNA1249042_S_NODE_39894_length_224_cov_2.453039_g39680_i0 PRJNA1249042 39894 224 2.453039 5.49480736 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g39680 i0 100 0.125 28 0 13 0 197 224 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18206463 18206463 PRJNA1249042_S_NODE_71495_length_186_cov_1.468531_g71281_i0 PRJNA1249042 71495 186 1.468531 2.73146766 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g71281 i0 100 0.150537634408602 28 0 15 0 159 186 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23306622 23306622 PRJNA1249042_S_NODE_14459_length_284_cov_1.692946_g14245_i0 PRJNA1249042 14459 284 1.692946 4.80796664 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g14245 i0 100 0.0985915492957746 28 0 10 0 257 284 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
27800349 27800349 PRJNA1249042_S_NODE_39544_length_225_cov_1.291209_g39330_i0 PRJNA1249042 39544 225 1.291209 2.90522025 Ditylenchus destructor 166010 Nematoda Nematoda 49.3 1.17e-5   NR KAI1724385.1 166010 g39330 i0 70 8.26666666666667 30 9 40 0 178 89 44 73 KAI1724385.1 4F5 protein family domain-containing protein [Ditylenchus destructor] diamond 1860 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
31292288 31292288 PRJNA1249042_S_NODE_65395_length_192_cov_2.322148_g65181_i0 PRJNA1249042 65395 192 2.322148 4.45852416 Metazoa 33208 Nematoda Nematoda 43.9 0.00713   NR UMM15994.1 6238 g65181 i0 46.8 9.046875 62 24 96.9 2 5 190 117 169 UMM15994.1 hypothetical protein L5515_013198 [Caenorhabditis briggsae] diamond 1737 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
31956534 31956534 PRJNA1249042_S_NODE_95697_length_164_cov_3.685950_g95483_i0 PRJNA1249042 95697 164 3.68595 6.044958 Metazoa 33208 Nematoda Nematoda 45.8 1.08e-4   NR VDK52889.1 637853 g95483 i0 84 2.41463414634146 25 4 45.7 0 163 89 26 50 VDK52889.1 unnamed protein product [Gongylonema pulchrum] diamond 396 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gongylonematidae Gongylonema Gongylonema pulchrum
32255366 32255366 PRJNA1249042_S_NODE_23278_length_255_cov_5.042453_g23064_i0 PRJNA1249042 23278 255 5.042453 12.85825515 Pristionchus mayeri 1317129 Nematoda Nematoda 46.6 0.00196   NR GMR37733.1 1317129 g23064 i0 36.5 0.741176470588235 63 22 65.9 2 189 22 179 230 GMR37733.1 hypothetical protein PMAYCL1PPCAC_07928 [Pristionchus mayeri] diamond 189 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;