RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1249042" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA1249042 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2905510 2905510 PRJNA1249042_S_NODE_74123_length_183_cov_2.835714_g73909_i0 PRJNA1249042 74123 183 2.835714 5.18935662 Methanobrevibacter millerae 230361 Archaea Archaea 231 1.87e-56   NTclustered gi|968564921|gb|CP011266.1| 230361 g73909 i0 89.56 4.90710382513661 182 19 99 0 1 182 588948 589129 Methanobrevibacter millerae strain SM9, complete genome blastn 898 231 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
10558715 10558715 PRJNA1249042_S_NODE_56429_length_202_cov_2.069182_g56215_i0 PRJNA1249042 56429 202 2.069182 4.17974764 Methanobrevibacter millerae 230361 Archaea Archaea 285 1.59e-72   NTclustered gi|968564921|gb|CP011266.1| 230361 g56215 i0 92.079 5 202 16 100 0 1 202 80396 80195 Methanobrevibacter millerae strain SM9, complete genome blastn 1010 285 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
26693727 26693727 PRJNA1249042_S_NODE_93281_length_166_cov_3.040650_g93067_i0 PRJNA1249042 93281 166 3.04065 5.047479 Methanobacterium subterraneum 59277 Archaea Archaea 41.2 0.044   NR WP_100905497.1 59277 g93067 i0 43.6 0.704819277108434 39 22 70.5 0 6 122 88 126 WP_100905497.1 Fpg/Nei family DNA glycosylase [Methanobacterium subterraneum] diamond 117 41.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium subterraneum
26852375 26852375 PRJNA1249042_S_NODE_110341_length_154_cov_1.729730_g110127_i0 PRJNA1249042 110341 154 1.72973 2.6637842 Methanobrevibacter sp. 66852 Archaea Archaea 106 1.67e-27   NR MDO5827389.1 66852 g110127 i0 100 0.993506493506494 51 0 99.4 0 1 153 10 60 MDO5827389.1 TIGR00295 family protein [Methanobrevibacter sp.] diamond 153 106 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;