RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1249042" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA1249042 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9282653 9282653 PRJNA1249042_S_NODE_32688_length_236_cov_2.435233_g32474_i0 PRJNA1249042 32688 236 2.435233 5.74714988 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 363 8.609999999999998e-96   NTclustered gi|27461806|gb|AY130826.1| 56466 g32474 i0 94.167 1.01694915254237 240 10 100 3 1 236 711 472 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 240 363 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
9980283 9980283 PRJNA1249042_S_NODE_36148_length_230_cov_2.513369_g35934_i0 PRJNA1249042 36148 230 2.513369 5.7807487 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 121 5.55e-23   NTclustered gi|2414483|emb|Y00055.1| 5656 g35934 i0 98.529 36.5391304347826 68 1 30 0 163 230 8065 8132 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 8404 121 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
9980382 9980382 PRJNA1249042_S_NODE_79568_length_178_cov_2.437037_g79354_i0 PRJNA1249042 79568 178 2.437037 4.33792586 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 329 6.21e-86   NTclustered gi|198250379|gb|EU696948.1| 556273 g79354 i0 100 96.8426966292135 178 0 100 0 1 178 1151 1328 Allovahlkampfia spelaea strain SK1 18S ribosomal RNA gene, complete sequence blastn 17238 329 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia spelaea
18206071 18206071 PRJNA1249042_S_NODE_25675_length_250_cov_2.671498_g25461_i0 PRJNA1249042 25675 250 2.671498 6.678745 Lepocinclis tripteris 135494 Euglenozoa other_Eukaryota 52.8 0.023   NTclustered gi|1509776293|gb|MH898669.1| 135494 g25461 i0 100 0.224 28 0 11 0 105 132 16617 16590 Lepocinclis tripteris chloroplast, complete genome blastn 56 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Phacaceae Lepocinclis Lepocinclis tripteris
18206505 18206505 PRJNA1249042_S_NODE_76755_length_181_cov_1.572464_g76541_i0 PRJNA1249042 76755 181 1.572464 2.84615984 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 254 3.93e-63   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g76541 i0 96.154 19.4917127071823 156 5 86 1 1 156 3746 3592 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3528 254 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
18903734 18903734 PRJNA1249042_S_NODE_25475_length_250_cov_11.555556_g25261_i0 PRJNA1249042 25475 250 11.555556 28.88889 Kinetoplastea 5653 Euglenozoa other_Eukaryota 418 1.9399999999999998e-112   NTclustered gi|20331092|gb|AY028450.1| 351713 g25261 i0 96.8 81.832 250 8 100 0 1 250 395 146 Bodo caudatus 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20458 418 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Parabodo Parabodo caudatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;