RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1249042", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 1 ✖

tax_clade 1

  • CRuMs · 1 ✖

bioproject 1

  • PRJNA1249042 · 1 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8705181 8705181 PRJNA1249042_S_NODE_93687_length_166_cov_1.910569_g93473_i0 PRJNA1249042 93687 166 1.910569 3.17154454 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.5 6.38e-11   NTclustered gi|1200177725|gb|MF039359.1| 190325 g93473 i0 77.108 26.433734939759 166 21 100 9 1 166 4539 4687 Collodictyon triciliatum isolate C_KIVT04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4388 80.5 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;