RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1248471", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 1 ✖

tax_phylum 1

  • Spirochaetota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1248471 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30199778 30199778 PRJNA1248471_S_NODE_12412_length_193_cov_1.395833_g12312_i0 PRJNA1248471 12412 193 1.395833 2.69395769 Treponema paraluiscuniculi 53435 Bacteria Bacteria 43.5 0.00128   NR WP_333760307.1 53435 g12312 i0 45.3 1.25906735751295 53 25 82.4 2 161 3 11 59 WP_333760307.1 hypothetical protein, partial [Treponema paraluiscuniculi] diamond 243 43.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema paraluiscuniculi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;