RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1248471" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1248471 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11832165 11832165 PRJNA1248471_S_NODE_16430_length_174_cov_0.944000_g16330_i0 PRJNA1248471 16430 174 0.944 1.64256 Pleistophora mulleri 249366 Fungi Fungi 130 6.57e-26   NTclustered gi|134147422|gb|EF119339.1| 249366 g16330 i0 81.287 0.982758620689655 171 23 95 7 10 174 2537 2370 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 171 130 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri
14382669 14382669 PRJNA1248471_S_NODE_11112_length_199_cov_1.933333_g11012_i0 PRJNA1248471 11112 199 1.933333 3.84733267 Pseudoloma neurophilia 146866 Fungi Fungi 368 1.51e-97   NTclustered gi|11993647|gb|AF322654.1| 146866 g11012 i0 100 87.9447236180904 199 0 100 0 1 199 363 561 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17501 368 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
14382829 14382829 PRJNA1248471_S_NODE_4472_length_264_cov_1.888372_g4372_i0 PRJNA1248471 4472 264 1.888372 4.98530208 Vavraia culicis 103449 Fungi Fungi 318 2.1499999999999998e-82   NTclustered gi|667636757|ref|XR_552273.1| 948595 g4372 i0 88.476 16.9659090909091 269 23 100 6 1 264 738 1003 Vavraia culicis subsp. floridensis 28S ribosomal RNA (VCUG_02832), partial rRNA blastn 4479 318 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Vavraia Vavraia culicis
19479649 19479649 PRJNA1248471_S_NODE_20176_length_164_cov_2.886957_g20076_i0 PRJNA1248471 20176 164 2.886957 4.73460948 Vavraia culicis 103449 Fungi Fungi 202 1.28e-47   NTclustered gi|667636757|ref|XR_552273.1| 948595 g20076 i0 90 79.7865853658537 160 11 97 4 1 159 678 523 Vavraia culicis subsp. floridensis 28S ribosomal RNA (VCUG_02832), partial rRNA blastn 13085 202 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Vavraia Vavraia culicis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;