RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1248471", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1248471 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27831679 27831679 PRJNA1248471_S_NODE_12824_length_191_cov_0.795775_g12724_i0 PRJNA1248471 12824 191 0.795775 1.51993025 Trichuris trichiura 36087 Nematoda Nematoda 61.6 3.45e-9   NR CDW61368.1 36087 g12724 i0 63.8 1.83769633507853 47 11 64.4 1 67 189 194 240 CDW61368.1 hypothetical protein TTRE_0000982701, partial [Trichuris trichiura] diamond 351 61.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
30515945 30515945 PRJNA1248471_S_NODE_8593_length_211_cov_0.722222_g8493_i0 PRJNA1248471 8593 211 0.722222 1.52388842 Trichuris trichiura 36087 Nematoda Nematoda 55.8 5.4e-7   NR CDW60996.1 36087 g8493 i0 68.2 1.7345971563981 44 14 62.6 0 69 200 265 308 CDW60996.1 hypothetical protein TTRE_0000940601 [Trichuris trichiura] diamond 366 55.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;