RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1248471", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1248471 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8007009 8007009 PRJNA1248471_S_NODE_21787_length_162_cov_0.920354_g21687_i0 PRJNA1248471 21787 162 0.920354 1.49097348 uncultured diatom 137771 SAR_Eukaryotes SAR_Eukaryotes 126 7.83e-25   NTclustered gi|60687350|gb|AY821977.1| 137771 g21687 i0 92.135 6.11111111111111 89 7 55 0 72 160 381 469 Uncultured diatom clone CV1_B2_82 small subunit ribosomal RNA gene, partial sequence blastn 990 126 1 Eukaryota Sar   Bacillariophyta         uncultured diatom
15079576 15079576 PRJNA1248471_S_NODE_12552_length_192_cov_1.832168_g12452_i0 PRJNA1248471 12552 192 1.832168 3.51776256 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 355 1.13e-93   NTclustered gi|27262897|emb|Y10566.2| 92081 g12452 i0 100 100 192 0 100 0 1 192 755 946 Peridinium balticum endosymbiont partial 18S rRNA gene blastn 19200 355 1 Eukaryota Sar   Bacillariophyta         Peridinium balticum endosymbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;