RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1248471" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1248471 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11832265 11832265 PRJNA1248471_S_NODE_4770_length_258_cov_2.133971_g4670_i0 PRJNA1248471 4770 258 2.133971 5.50564518 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 466 7.08e-127   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g4670 i0 99.225 119.085271317829 258 2 100 0 1 258 5625027 5625284 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 30724 466 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
28841966 28841966 PRJNA1248471_S_NODE_15128_length_179_cov_1.200000_g15028_i0 PRJNA1248471 15128 179 1.2 2.148 Candidatus Brocadiia bacterium 2517210 Bacteria Bacteria 43.1 0.0116   NR HRU06410.1 2517210 g15028 i0 42.1 0.636871508379888 38 22 63.7 0 116 3 5 42 HRU06410.1 ABC transporter ATP-binding protein [Candidatus Brocadiia bacterium] diamond 114 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia       Candidatus Brocadiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;