RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1248424", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1248424 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1627809 1627809 PRJNA1248424_P_NODE_63902_length_265_cov_1.203125_g57833_i0 PRJNA1248424 63902 265 1.203125 3.18828125 Potexvirus citriflavivenae 3433772 Viruses Viruses 484 2.0199999999999998e-132   NTclustered gi|764160352|ref|NC_026592.1| 1214459 g57833 i0 99.623 82 265 1 100 0 1 265 4890 4626 Citrus yellow vein clearing virus isolate CQ, complete genome blastn 21730 484 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
5456772 5456772 PRJNA1248424_P_NODE_78865_length_242_cov_0.911243_g72796_i0 PRJNA1248424 78865 242 0.911243 2.20520806 Carlavirus unipseudostellariae 3427802 Viruses Viruses 435 1.85e-117   NTclustered gi|2314647643|gb|ON241319.1| 2982810 g72796 i0 99.17 1.99173553719008 241 2 99 0 2 242 7846 7606 Pseudostellaria heterophylla carlavirus 1, complete genome blastn 482 435 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus unipseudostellariae
20753968 20753968 PRJNA1248424_P_NODE_32277_length_469_cov_5.244949_g26225_i0 PRJNA1248424 32277 469 5.244949 24.59881081 Carlavirus unipseudostellariae 3427802 Viruses Viruses 401 3.929999999999999e-107   NTclustered gi|2314647643|gb|ON241319.1| 2982810 g26225 i0 99.545 4.83155650319829 220 1 79 0 1 220 6847 7066 Pseudostellaria heterophylla carlavirus 1, complete genome blastn 2266 401 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus unipseudostellariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;