RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1248424" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1248424 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20754424 20754424 PRJNA1248424_P_NODE_56397_length_285_cov_1.089623_g50329_i0 PRJNA1248424 56397 285 1.089623 3.10542555 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 442 1.3399999999999994e-119   NTclustered gi|62865939|gb|AY929914.1| 325077 g50329 i0 95.971 95.0140350877193 273 9 95 2 15 285 1369 1641 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 27079 442 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
26693697 26693697 PRJNA1248424_P_NODE_74641_length_246_cov_0.890173_g68572_i0 PRJNA1248424 74641 246 0.890173 2.18982558 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 140 1.69e-38   NR XP_004344609.1 1257118 g68572 i0 79 3.95121951219512 81 17 98.8 0 3 245 199 279 XP_004344609.1 vacuolar protein sortingassociated protein 26, putative [Acanthamoeba castellanii str. Neff] diamond 972 140 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28494889 28494889 PRJNA1248424_P_NODE_42207_length_356_cov_1.431095_g36145_i0 PRJNA1248424 42207 356 1.431095 5.0946982 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 135 1.5499999999999998e-37   NR XP_004334896.1 1257118 g36145 i0 59.1 0.969101123595506 115 45 96.1 2 344 3 1 114 XP_004334896.1 ribosomal protein L6, putative [Acanthamoeba castellanii str. Neff] diamond 345 135 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29789163 29789163 PRJNA1248424_P_NODE_62731_length_268_cov_1.441026_g56662_i0 PRJNA1248424 62731 268 1.441026 3.86194968 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57 4.9e-7   NR XP_004341507.1 1257118 g56662 i0 41.1 2.00373134328358 90 50 97.4 1 261 1 670 759 XP_004341507.1 ribosomal RNA large subunit methyltransferase J, putative [Acanthamoeba castellanii str. Neff] diamond 537 57 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31274264 31274264 PRJNA1248424_P_NODE_56375_length_285_cov_1.136792_g50307_i0 PRJNA1248424 56375 285 1.136792 3.2398572 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 108 4.29e-26   NR XP_004341762.1 1257118 g50307 i0 54 3.66315789473684 87 40 91.6 0 269 9 40 126 XP_004341762.1 TolAlike protein [Acanthamoeba castellanii str. Neff] diamond 1044 108 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32001838 32001838 PRJNA1248424_P_NODE_67938_length_254_cov_0.861878_g61869_i0 PRJNA1248424 67938 254 0.861878 2.18917012 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 78.2 3e-15   NR XP_004340229.1 1257118 g61869 i0 51.8 5.7755905511811 83 38 95.7 1 252 10 163 245 XP_004340229.1 ribosomal protein L6e, putative [Acanthamoeba castellanii str. Neff] diamond 1467 78.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32223386 32223386 PRJNA1248424_P_NODE_51298_length_302_cov_1.912664_g45230_i0 PRJNA1248424 51298 302 1.912664 5.77624528 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 89.4 9.31e-19   NR XP_004341750.1 1257118 g45230 i0 67.2 0.665562913907285 67 21 66.6 1 10 210 85 150 XP_004341750.1 TolAlike protein [Acanthamoeba castellanii str. Neff] diamond 201 89.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;