RNAquarium Metadata Server
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contig_metadata

14 rows where bioproject = "PRJNA1248424" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 14 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1248424 · 14 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4180357 4180357 PRJNA1248424_P_NODE_67364_length_255_cov_1.824176_g61295_i0 PRJNA1248424 67364 255 1.824176 4.6516488 root 1 Root_unresolved Root_unresolved 155 8.679999999999999e-45   NR HET7828574.1 2952938 g61295 i0 85.7 9.85882352941177 84 12 98.8 0 253 2 155 238 HET7828574.1 FAD-binding oxidoreductase [Candidatus Limnocylindrales bacterium] diamond 2514 155 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria Candidatus Limnocylindrales     Candidatus Limnocylindrales bacterium
10557312 10557312 PRJNA1248424_P_NODE_69069_length_251_cov_0.865169_g63000_i0 PRJNA1248424 69069 251 0.865169 2.17157419 Bacillati 1783272 Bacteria Bacteria 143 6.829999999999999e-40   NR MDQ6793663.1 2026724 g63000 i0 84.3 5.9402390438247 83 13 99.2 0 2 250 60 142 MDQ6793663.1 aspartate carbamoyltransferase catalytic subunit [Chloroflexota bacterium] diamond 1491 144 0.993055555555556 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
18204723 18204723 PRJNA1248424_P_NODE_60815_length_273_cov_2.130000_g54747_i0 PRJNA1248424 60815 273 2.13 5.8149 PVC group 1783257 Bacteria Bacteria 91.3 2.52e-20   NR MEP7356428.1 2073117 g54747 i0 51.7 3.95604395604396 89 43 97.8 0 3 269 98 186 MEP7356428.1 4-alpha-glucanotransferase [Anaerolineales bacterium] diamond 1080 92 0.992391304347826 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
26820633 26820633 PRJNA1248424_P_NODE_47541_length_322_cov_2.815261_g41474_i0 PRJNA1248424 47541 322 2.815261 9.06514042 Chloroflexota bacterium 2026724 Bacteria Bacteria 89 5.93e-20   NR HZR98716.1 2026724 g41474 i0 85.7 0.91304347826087 49 7 45.7 0 149 3 51 99 HZR98716.1 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Chloroflexota bacterium] diamond 294 89 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
26915404 26915404 PRJNA1248424_P_NODE_71302_length_249_cov_0.875000_g65233_i0 PRJNA1248424 71302 249 0.875 2.17875 Chloroflexota bacterium 2026724 Bacteria Bacteria 42.7 0.0375   NR MBI2957355.1 2026724 g65233 i0 35.1 0.891566265060241 74 43 84.3 2 244 35 187 259 MBI2957355.1 PQQ-dependent sugar dehydrogenase [Chloroflexota bacterium] diamond 222 42.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27831666 27831666 PRJNA1248424_P_NODE_45364_length_334_cov_2.061303_g39300_i0 PRJNA1248424 45364 334 2.061303 6.88475202 Anaerolineales bacterium 2073117 Bacteria Bacteria 44.7 0.0216   NR MEJ2599791.1 2073117 g39300 i0 29.3 0.826347305389222 92 53 71.9 3 88 327 355 446 MEJ2599791.1 hypothetical protein [Anaerolineales bacterium] diamond 276 44.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
28021349 28021349 PRJNA1248424_P_NODE_78885_length_242_cov_0.911243_g72816_i0 PRJNA1248424 78885 242 0.911243 2.20520806 Chloroflexota bacterium 2026724 Bacteria Bacteria 116 7.21e-32   NR MDQ3870499.1 2026724 g72816 i0 75 0.991735537190083 80 20 99.2 0 2 241 10 89 MDQ3870499.1 tetratricopeptide repeat protein [Chloroflexota bacterium] diamond 240 116 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28544629 28544629 PRJNA1248424_P_NODE_25627_length_628_cov_3.448649_g19670_i0 PRJNA1248424 25627 628 3.448649 21.65751572 Bacteria 2 Bacteria Bacteria 53.9 5.24e-5   NR MCX6000258.1 2026724 g19670 i0 44.2 1.60031847133758 52 29 24.8 0 469 314 142 193 MCX6000258.1 ATP-dependent Clp protease proteolytic subunit [Chloroflexota bacterium] diamond 1005 54.3 0.992633517495396 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29599603 29599603 PRJNA1248424_P_NODE_3770_length_3111_cov_21.351547_g2810_i0 PRJNA1248424 3770 3111 21.351547 664.24662717 Chloroflexota bacterium 2026724 Bacteria Bacteria 92.4 3.82e-15   NR MCP4356419.1 2026724 g2810 i0 23.7 0.541947926711668 562 334 51.6 22 718 2322 53 546 MCP4356419.1 ATP-binding domain-containing protein [Chloroflexota bacterium] diamond 1686 92.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29789160 29789160 PRJNA1248424_P_NODE_60631_length_274_cov_1.288557_g54563_i0 PRJNA1248424 60631 274 1.288557 3.53064618 Chloroflexales bacterium 2725990 Bacteria Bacteria 125 3.659999999999999e-31   NR MBC8075372.1 2725990 g54563 i0 67.4 0.974452554744526 89 29 97.4 0 269 3 150 238 MBC8075372.1 alpha-galactosidase [Chloroflexales bacterium] diamond 267 125 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales     Chloroflexales bacterium
30610601 30610601 PRJNA1248424_P_NODE_67933_length_254_cov_0.906077_g61864_i0 PRJNA1248424 67933 254 0.906077 2.30143558 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 42.7 0.0418   NR HIN06841.1 2026734 g61864 i0 38.9 1.2755905511811 54 33 63.8 0 48 209 40 93 HIN06841.1 hypothetical protein [Dehalococcoidia bacterium] diamond 324 42.7 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30831837 30831837 PRJNA1248424_P_NODE_57454_length_282_cov_1.382775_g51386_i0 PRJNA1248424 57454 282 1.382775 3.8994255 Anaerolineales bacterium 2073117 Bacteria Bacteria 162 2.06e-46   NR HXD10291.1 2073117 g51386 i0 81.5 11.7446808510638 92 17 97.9 0 6 281 183 274 HXD10291.1 spermidine/putrescine ABC transporter substrate-binding protein [Anaerolineales bacterium] diamond 3312 162 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
32191801 32191801 PRJNA1248424_P_NODE_62098_length_270_cov_1.243655_g56029_i0 PRJNA1248424 62098 270 1.243655 3.3578685 Anaerolineae bacterium 2052143 Bacteria Bacteria 161 7.49e-49   NR MFO7743059.1 2052143 g56029 i0 87.6 0.988888888888889 89 11 98.9 0 2 268 22 110 MFO7743059.1 reverse transcriptase domain-containing protein [Anaerolineae bacterium] diamond 267 161 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
32665694 32665694 PRJNA1248424_P_NODE_43100_length_350_cov_1.083032_g37038_i0 PRJNA1248424 43100 350 1.083032 3.790612 Anaerolineae bacterium 2052143 Bacteria Bacteria 125 4.3e-34   NR MFO7743059.1 2052143 g37038 i0 79.7 0.677142857142857 79 14 67.7 1 114 350 39 115 MFO7743059.1 reverse transcriptase domain-containing protein [Anaerolineae bacterium] diamond 237 125 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;