RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

35 rows where bioproject = "PRJNA1248424", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 35 ✖

tax_kingdom 1

  • Pseudomonadati · 35 ✖

bioproject 1

  • PRJNA1248424 · 35 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1627793 1627793 PRJNA1248424_P_NODE_63362_length_266_cov_1.870466_g57293_i0 PRJNA1248424 63362 266 1.870466 4.97543956 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 97.1 1.11e-15   NTclustered gi|2874253959|emb|OY970284.1| 2651171 g57293 i0 84.694 17.0864661654135 98 14 36 1 170 266 1388647 1388744 MAG: Thermoanaerobaculia bacterium isolate MFD05513.bin.1.42 genome assembly, chromosome: 1 blastn 4545 97.1 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
1628093 1628093 PRJNA1248424_P_NODE_77202_length_244_cov_0.900585_g71133_i0 PRJNA1248424 77202 244 0.900585 2.1974274 Acidobacteriota 57723 Bacteria Bacteria 137 1.33e-36   NR MSO29362.1 1978231 g71133 i0 87.5 8.85245901639344 80 10 98.4 0 242 3 244 323 MSO29362.1 tRNA 4-thiouridine(8) synthase ThiI [Acidobacteriota bacterium] diamond 2160 137 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
4180259 4180259 PRJNA1248424_P_NODE_62384_length_269_cov_1.408163_g56315_i0 PRJNA1248424 62384 269 1.408163 3.78795847 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 120 1.54e-29   NR HZI20419.1 2283092 g56315 i0 70.3 1.01486988847584 91 25 99.3 1 1 267 42 132 HZI20419.1 formimidoylglutamate deiminase [Pyrinomonadaceae bacterium] diamond 273 120 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
4879958 4879958 PRJNA1248424_P_NODE_55884_length_286_cov_1.356808_g49816_i0 PRJNA1248424 55884 286 1.356808 3.88047088 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 132 6.289999999999998e-35   NR HKC23948.1 2651171 g49816 i0 65.3 1.99300699300699 95 33 99.7 0 286 2 33 127 HKC23948.1 TauD/TfdA family dioxygenase [Thermoanaerobaculia bacterium] diamond 570 132 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
11831430 11831430 PRJNA1248424_P_NODE_51930_length_299_cov_2.557522_g45862_i0 PRJNA1248424 51930 299 2.557522 7.64699078 Bacteria 2 Bacteria Bacteria 94.4 3.42e-20   NR MCA1612606.1 1978231 g45862 i0 86 1.00334448160535 50 7 50.2 0 1 150 152 201 MCA1612606.1 glycosyltransferase [Acidobacteriota bacterium] diamond 300 94.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
11831769 11831769 PRJNA1248424_P_NODE_69970_length_250_cov_1.305085_g63901_i0 PRJNA1248424 69970 250 1.305085 3.2627125 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 151 2.35e-40   NR HYR28161.1 2651171 g63901 i0 91.5 0.984 82 7 98.4 0 3 248 286 367 HYR28161.1 oligopeptide transporter, OPT family [Thermoanaerobaculia bacterium] diamond 246 151 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
13106680 13106680 PRJNA1248424_P_NODE_47611_length_322_cov_2.582329_g41544_i0 PRJNA1248424 47611 322 2.582329 8.31509938 Blastocatellia bacterium 2052146 Bacteria Bacteria 99.4 9.74e-22   NR HBB95072.1 2052146 g41544 i0 91.8 3.64285714285714 49 4 45.7 0 174 320 42 90 HBB95072.1 heme ABC transporter ATP-binding protein [Blastocatellia bacterium] diamond 1173 99.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
14382048 14382048 PRJNA1248424_P_NODE_55092_length_288_cov_1.269767_g49024_i0 PRJNA1248424 55092 288 1.269767 3.65692896 Blastocatellia bacterium 2052146 Bacteria Bacteria 142 4.68e-39   NR MEA2175979.1 2052146 g49024 i0 80 1.97916666666667 95 19 99 0 3 287 163 257 MEA2175979.1 hypothetical protein [Blastocatellia bacterium] diamond 570 142 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
14382507 14382507 PRJNA1248424_P_NODE_77792_length_243_cov_0.905882_g71723_i0 PRJNA1248424 77792 243 0.905882 2.20129326 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 165 2.6999999999999997e-36   NTclustered gi|2874253744|emb|OY969603.1| 171953 g71723 i0 85.443 5.24279835390946 158 23 65 0 1 158 1687176 1687019 MAG: uncultured Acidobacteriota bacterium isolate MFD01476.bin.c.1 genome assembly, chromosome: 1 blastn 1274 165 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
16354409 16354409 PRJNA1248424_P_NODE_78953_length_242_cov_0.911243_g72884_i0 PRJNA1248424 78953 242 0.911243 2.20520806 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 157 1.9299999999999998e-43   NR HEY0099938.1 2283092 g72884 i0 92.5 0.991735537190083 80 6 99.2 0 1 240 256 335 HEY0099938.1 FAD-dependent oxidoreductase [Pyrinomonadaceae bacterium] diamond 240 157 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
18903382 18903382 PRJNA1248424_P_NODE_53495_length_292_cov_3.127854_g47427_i0 PRJNA1248424 53495 292 3.127854 9.13333368 Bacteria 2 Bacteria Bacteria 100 1.63e-22   NR MDT5272738.1 1978231 g47427 i0 95.9 3.52397260273973 49 2 50.3 0 3 149 147 195 MDT5272738.1 protease PrsW [Acidobacteriota bacterium] diamond 1029 100 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
20754624 20754624 PRJNA1248424_P_NODE_65197_length_261_cov_1.654255_g59128_i0 PRJNA1248424 65197 261 1.654255 4.31760555 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 117 8.32e-22   NTclustered gi|2874253940|emb|OY970265.1| 171953 g59128 i0 98.485 12.4750957854406 66 1 25 0 196 261 4850260 4850325 MAG: uncultured Acidobacteriota bacterium isolate MFD01476.bin.1.56 genome assembly, chromosome: 1 blastn 3256 117 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
26965070 26965070 PRJNA1248424_P_NODE_78262_length_243_cov_0.905882_g72193_i0 PRJNA1248424 78262 243 0.905882 2.20129326 Pseudomonadati 3379134 Bacteria Bacteria 160 6.35e-44   NR HYA30960.1 1978231 g72193 i0 91.4 9 81 7 100 0 243 1 27 107 HYA30960.1 acetate--CoA ligase family protein [Acidobacteriota bacterium] diamond 2187 161 0.993788819875776 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27060068 27060068 PRJNA1248424_P_NODE_53122_length_294_cov_1.407240_g47054_i0 PRJNA1248424 53122 294 1.40724 4.1372856 Acidobacteriota 57723 Bacteria Bacteria 100 7.429999999999999e-23   NR MDP9120630.1 1978231 g47054 i0 45.8 3.87755102040816 96 52 98 0 294 7 240 335 MDP9120630.1 AAA-like domain-containing protein [Acidobacteriota bacterium] diamond 1140 100 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27249718 27249718 PRJNA1248424_P_NODE_51623_length_300_cov_5.299559_g45555_i0 PRJNA1248424 51623 300 5.299559 15.898677 Bacteria 2 Bacteria Bacteria 94.7 5.8100000000000006e-21   NR RPI51292.1 1978231 g45555 i0 89.8 2.45 49 5 49 0 4 150 34 82 RPI51292.1 MAG: hypothetical protein EHM55_19315 [Acidobacteriota bacterium] diamond 735 94.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27737300 27737300 PRJNA1248424_P_NODE_47524_length_322_cov_2.899598_g41457_i0 PRJNA1248424 47524 322 2.899598 9.33670556 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 100 1.44e-22   NR HEY0172846.1 2283092 g41457 i0 92 0.93167701863354 50 4 46.6 0 1 150 251 300 HEY0172846.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 300 100 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28400055 28400055 PRJNA1248424_P_NODE_47906_length_321_cov_7.681452_g41839_i0 PRJNA1248424 47906 321 7.681452 24.65746092 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 94.7 2.3000000000000003e-22   NR HYP09382.1 2212468 g41839 i0 89.6 0.448598130841121 48 5 44.9 0 175 318 70 117 HYP09382.1 metallopeptidase family protein [Bryobacteraceae bacterium] diamond 144 94.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
28494904 28494904 PRJNA1248424_P_NODE_64067_length_264_cov_1.937173_g57998_i0 PRJNA1248424 64067 264 1.937173 5.11413672 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 143 9.61e-39   NR MEO7273638.1 2910147 g57998 i0 80.5 0.988636363636364 87 17 98.9 0 262 2 23 109 MEO7273638.1 5'-deoxyadenosine deaminase [Vicinamibacterales bacterium] diamond 261 143 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
28747378 28747378 PRJNA1248424_P_NODE_57327_length_282_cov_2.272727_g51259_i0 PRJNA1248424 57327 282 2.272727 6.40909014 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 188 2.529999999999999e-55   NR HEX7314139.1 2283092 g51259 i0 96.8 3 94 3 100 0 1 282 302 395 HEX7314139.1 iron-containing redox enzyme family protein [Pyrinomonadaceae bacterium] diamond 846 188 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28955117 28955117 PRJNA1248424_P_NODE_70588_length_250_cov_0.870056_g64519_i0 PRJNA1248424 70588 250 0.870056 2.17514 FCB group 1783270 Bacteria Bacteria 41.2 0.0102   NR MDQ3906983.1 1978231 g64519 i0 100 8.64 20 0 24 0 190 249 1 20 MDQ3906983.1 gas vesicle protein [Acidobacteriota bacterium] diamond 2160 41.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29631150 29631150 PRJNA1248424_P_NODE_71690_length_249_cov_0.875000_g65621_i0 PRJNA1248424 71690 249 0.875 2.17875 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 117 1.9199999999999999e-31   NR MCW5979549.1 2212468 g65621 i0 64.6 3.95180722891566 82 29 98.8 0 248 3 56 137 MCW5979549.1 GyrI-like domain-containing protein [Bryobacteraceae bacterium] diamond 984 117 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29915819 29915819 PRJNA1248424_P_NODE_61951_length_270_cov_1.913706_g55882_i0 PRJNA1248424 61951 270 1.913706 5.1670062 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 94.4 1.5600000000000002e-21   NR HEX8249776.1 2283092 g55882 i0 90 0.555555555555556 50 5 55.6 0 121 270 1 50 HEX8249776.1 translation initiation factor IF-3 [Pyrinomonadaceae bacterium] diamond 150 94.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30389985 30389985 PRJNA1248424_P_NODE_63253_length_267_cov_0.896907_g57184_i0 PRJNA1248424 63253 267 0.896907 2.39474169 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 161 7.83e-44   NR HEX8737264.1 2283092 g57184 i0 94.3 0.98876404494382 88 5 98.9 0 266 3 407 494 HEX8737264.1 LPS export ABC transporter periplasmic protein LptC [Pyrinomonadaceae bacterium] diamond 264 161 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30484453 30484453 PRJNA1248424_P_NODE_80373_length_241_cov_0.916667_g74304_i0 PRJNA1248424 80373 241 0.916667 2.20916747 Acidobacteriota bacterium 1978231 Bacteria Bacteria 144 2.0599999999999993e-40   NR MCA1567378.1 1978231 g74304 i0 94.9 0.983402489626556 79 4 98.3 0 239 3 1 79 MCA1567378.1 tetratricopeptide repeat protein [Acidobacteriota bacterium] diamond 237 144 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30831832 30831832 PRJNA1248424_P_NODE_47754_length_322_cov_2.016064_g41687_i0 PRJNA1248424 47754 322 2.016064 6.49172608 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 82.4 5.53e-16   NR HWM94393.1 2651171 g41687 i0 86 1.80745341614907 50 7 46.6 0 150 1 37 86 HWM94393.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 582 82.4 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
30895287 30895287 PRJNA1248424_P_NODE_75874_length_245_cov_0.895349_g69805_i0 PRJNA1248424 75874 245 0.895349 2.19360505 Acidobacteriota bacterium 1978231 Bacteria Bacteria 144 1.4e-38   NR MDT4898535.1 1978231 g69805 i0 88.9 0.991836734693878 81 9 99.2 0 2 244 383 463 MDT4898535.1 eukaryotic-like serine/threonine-protein kinase [Acidobacteriota bacterium] diamond 243 144 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31053363 31053363 PRJNA1248424_P_NODE_65555_length_260_cov_1.647059_g59486_i0 PRJNA1248424 65555 260 1.647059 4.2823534 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.5 0.0216   NR MEJ2009134.1 1978231 g59486 i0 38.2 0.634615384615385 55 34 63.5 0 46 210 46 100 MEJ2009134.1 PDZ domain-containing protein [Acidobacteriota bacterium] diamond 165 43.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31464314 31464314 PRJNA1248424_P_NODE_47496_length_322_cov_3.040161_g41429_i0 PRJNA1248424 47496 322 3.040161 9.78931842 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 97.4 4.08e-21   NR HEU4927365.1 2910147 g41429 i0 93.9 1.3695652173913 49 3 45.7 0 320 174 378 426 HEU4927365.1 hypothetical protein [Vicinamibacterales bacterium] diamond 441 97.4 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
31703559 31703559 PRJNA1248424_P_NODE_76757_length_244_cov_0.900585_g70688_i0 PRJNA1248424 76757 244 0.900585 2.1974274 Bacteria 2 Bacteria Bacteria 115 2.83e-28   NR MCC7177517.1 1978231 g70688 i0 70.5 14.3852459016393 78 23 95.9 0 236 3 332 409 MCC7177517.1 S1 RNA-binding domain-containing protein [Acidobacteriota bacterium] diamond 3510 115 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31717093 31717093 PRJNA1248424_P_NODE_52037_length_299_cov_1.314159_g45969_i0 PRJNA1248424 52037 299 1.314159 3.92933541 Acidobacteriota bacterium 1978231 Bacteria Bacteria 44.7 0.00777   NR MCB1025449.1 1978231 g45969 i0 52.6 0.381270903010033 38 18 38.1 0 283 170 19 56 MCB1025449.1 hypothetical protein [Acidobacteriota bacterium] diamond 114 44.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32033502 32033502 PRJNA1248424_P_NODE_51838_length_299_cov_5.017699_g45770_i0 PRJNA1248424 51838 299 5.017699 15.00292001 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 56.6 9.31e-7   NR HKV12838.1 2651171 g45770 i0 51 0.491638795986622 49 24 49.2 0 147 1 138 186 HKV12838.1 class I SAM-dependent DNA methyltransferase [Thermoanaerobaculia bacterium] diamond 147 56.6 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
32350087 32350087 PRJNA1248424_P_NODE_64039_length_264_cov_2.261780_g57970_i0 PRJNA1248424 64039 264 2.26178 5.9710992 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 134 1.31e-35   NR HET9268981.1 2910147 g57970 i0 73.6 0.988636363636364 87 23 98.9 0 262 2 77 163 HET9268981.1 glycosyltransferase family 4 protein [Vicinamibacterales bacterium] diamond 261 134 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
32381614 32381614 PRJNA1248424_P_NODE_65099_length_261_cov_2.946809_g59030_i0 PRJNA1248424 65099 261 2.946809 7.69117149 Terriglobia bacterium 2081523 Bacteria Bacteria 43.5 0.0219   NR MBZ5643332.1 2081523 g59030 i0 39.6 0.551724137931034 48 29 55.2 0 35 178 100 147 MBZ5643332.1 hypothetical protein [Terriglobia bacterium] diamond 144 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
32602864 32602864 PRJNA1248424_P_NODE_80240_length_241_cov_0.916667_g74171_i0 PRJNA1248424 80240 241 0.916667 2.20916747 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 96.7 5.41e-22   NR HEU5131289.1 2283092 g74171 i0 97.7 0.547717842323652 44 1 54.8 0 241 110 255 298 HEU5131289.1 rod shape-determining protein [Pyrinomonadaceae bacterium] diamond 132 96.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
32728829 32728829 PRJNA1248424_P_NODE_52600_length_296_cov_3.488789_g46532_i0 PRJNA1248424 52600 296 3.488789 10.32681544 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 97.4 4.350000000000001e-21   NR HEX8293175.1 2283092 g46532 i0 64.8 2.30067567567568 88 26 89.2 2 264 1 759 841 HEX8293175.1 TonB-dependent receptor [Pyrinomonadaceae bacterium] diamond 681 97.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;