RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1248424", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA1248424 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15079435 15079435 PRJNA1248424_P_NODE_33712_length_447_cov_1.077540_g27657_i0 PRJNA1248424 33712 447 1.07754 4.8166038 Gammaretrovirus 153135 Viruses Viruses 809 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g27657 i0 99.329 100.011185682327 447 3 100 0 1 447 3782 4228 Moloney murine leukemia virus, complete genome blastn 44705 815 0.992638036809816 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
24003867 24003867 PRJNA1248424_P_NODE_21739_length_782_cov_1.551481_g16036_i0 PRJNA1248424 21739 782 1.551481 12.13258142 root 1 Root_unresolved Root_unresolved 1423 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g16036 i0 99.488 38.8938618925831 782 4 100 0 1 782 6086 6867 Moloney murine leukemia virus, complete genome blastn 30415 1423 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
24003921 24003921 PRJNA1248424_P_NODE_61479_length_272_cov_0.969849_g55411_i0 PRJNA1248424 61479 272 0.969849 2.63798928 root 1 Root_unresolved Root_unresolved 479 9.659999999999999e-131   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g55411 i0 98.524 99.7536764705882 271 4 99 0 2 272 1930 1660 Moloney murine leukemia virus, complete genome blastn 27133 479 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;