RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1248424", tax_kingdom = "Fungi" and tax_phylum = "Microsporidia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1248424 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23304514 23304514 PRJNA1248424_P_NODE_21979_length_771_cov_2.762178_g16255_i0 PRJNA1248424 21979 771 2.762178 21.29639238 Vavraia culicis 103449 Fungi Fungi 63.9 3.58e-5   NTclustered gi|667635674|ref|XM_008076929.1| 948595 g16255 i0 93.182 0.365758754863813 44 1 6 2 148 191 200 159 Vavraia culicis subsp. floridensis uncharacterized protein (VCUG_02850), partial mRNA blastn 282 63.9 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Vavraia Vavraia culicis
31906901 31906901 PRJNA1248424_P_NODE_32037_length_474_cov_0.850374_g25987_i0 PRJNA1248424 32037 474 0.850374 4.03077276 Nematocida sp. LUAm3 2670340 Fungi Fungi 44.7 0.0232   NR KAI5171980.1 2670340 g25987 i0 35 0.379746835443038 60 31 32.9 1 222 67 19 78 KAI5171980.1 cleavage and polyadenylation specificity factor subunit 4 [Nematocida sp. LUAm3] diamond 180 44.7 1 Eukaryota Opisthokonta Fungi Microsporidia       Nematocida Nematocida sp. LUAm3
32445037 32445037 PRJNA1248424_P_NODE_19619_length_897_cov_1.760922_g14217_i0 PRJNA1248424 19619 897 1.760922 15.79547034 Trachipleistophora hominis 72359 Fungi Fungi 53.1 0.001   NR ELQ76088.1 72359 g14217 i0 31.1 0.354515050167224 106 73 35.5 0 671 354 428 533 ELQ76088.1 RNA-directed DNA polymerase, Non LTR Retrotransposon, partial [Trachipleistophora hominis] diamond 318 53.1 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Trachipleistophora Trachipleistophora hominis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;