RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1248424", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pseudomonadati · 1 ✖

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 1 ✖

bioproject 1

  • PRJNA1248424 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15655823 15655823 PRJNA1248424_P_NODE_52613_length_296_cov_2.968610_g46545_i0 PRJNA1248424 52613 296 2.96861 8.7870856 Candidatus Dasytiphilus stammeri 1895663 Bacteria Bacteria 56.5 0.002   NTclustered gi|2689068458|gb|CP145869.1| 1895663 g46545 i0 96.97 0.111486486486486 33 1 11 0 80 112 367841 367809 MAG: Candidatus Dasytiphilus stammeri isolate Pvir chromosome, complete genome blastn 33 56.5 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Dasytiphilus Candidatus Dasytiphilus stammeri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;