RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1248424", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1248424 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1628120 1628120 PRJNA1248424_P_NODE_78322_length_243_cov_0.905882_g72253_i0 PRJNA1248424 78322 243 0.905882 2.20129326 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 119 2.6e-30   NR MBI3321489.1 2035772 g72253 i0 65.8 5.81481481481481 79 27 97.5 0 241 5 271 349 MBI3321489.1 RluA family pseudouridine synthase [Candidatus Omnitrophota bacterium] diamond 1413 119 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27579092 27579092 PRJNA1248424_P_NODE_75824_length_245_cov_0.895349_g69755_i0 PRJNA1248424 75824 245 0.895349 2.19360505 Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_ 2035772 Bacteria Bacteria 43.9 0.0117   NR OGX39193.1 1801861 g69755 i0 32.8 0.783673469387755 64 39 78.4 1 38 229 91 150 OGX39193.1 MAG: hypothetical protein A3C53_04385 [Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_68_15] diamond 192 43.9 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_68_15

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;