RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1247234" and tax_phylum = "Candidatus Hydrogenedentota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1247234 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22028187 22028187 PRJNA1247234_P_NODE_22478_length_250_cov_0.881356_g22322_i0 PRJNA1247234 22478 250 0.881356 2.20339 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 244 3.48e-60   NTclustered gi|2621786419|emb|OY782877.1| 2030809 g22322 i0 84.462 108.9 251 35 99 4 1 249 2996446 2996198 MAG: Candidatus Hydrogenedentes bacterium isolate 28e603e2-5466-4732-bb1a-a7370d5bccbd genome assembly, chromosome: 1 blastn 27225 244 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
27515954 27515954 PRJNA1247234_P_NODE_20243_length_253_cov_0.866667_g20087_i0 PRJNA1247234 20243 253 0.866667 2.19266751 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 98.2 1.63e-24   NR HIJ65505.1 2030809 g20087 i0 62.3 0.91304347826087 77 28 90.1 1 247 20 21 97 HIJ65505.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 231 98.2 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
29662602 29662602 PRJNA1247234_P_NODE_27670_length_242_cov_0.923077_g27514_i0 PRJNA1247234 27670 242 0.923077 2.23384634 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 165 4.49e-48   NR MBX3180552.1 2030809 g27514 i0 93.8 0.991735537190083 80 5 99.2 0 242 3 47 126 MBX3180552.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 240 165 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;