RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA1247234", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 10 ✖

tax_phylum 1

  • Bdellovibrionota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1247234 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6729281 6729281 PRJNA1247234_P_NODE_24786_length_246_cov_0.901734_g24630_i0 PRJNA1247234 24786 246 0.901734 2.21826564 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 159 1.03e-45   NR MCO5114273.1 2026715 g24630 i0 91.5 1 82 7 100 0 1 246 244 325 MCO5114273.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit [Pseudobdellovibrionaceae bacterium] diamond 246 159 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
20752941 20752941 PRJNA1247234_P_NODE_21657_length_251_cov_0.876404_g21501_i0 PRJNA1247234 21657 251 0.876404 2.19977404 Bdellovibrio sp. HCB288 3394355 Bacteria Bacteria 150 7.84e-32   NTclustered gi|2895994964|gb|CP178619.1| 3394355 g21501 i0 78.367 135.573705179283 245 44 96 9 1 240 574765 574525 Bdellovibrio sp. HCB288 chromosome, complete genome blastn 34029 150 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB288
22028163 22028163 PRJNA1247234_P_NODE_21158_length_252_cov_0.871508_g21002_i0 PRJNA1247234 21158 252 0.871508 2.19620016 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 162 9.29e-50   NR MCO5114024.1 2026715 g21002 i0 98.8 0.976190476190476 82 1 97.6 0 251 6 46 127 MCO5114024.1 RidA family protein [Pseudobdellovibrionaceae bacterium] diamond 246 162 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
26598478 26598478 PRJNA1247234_P_NODE_8861_length_359_cov_1.433566_g8705_i0 PRJNA1247234 8861 359 1.433566 5.14650194 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 62.4 3.59e-10   NR MCB0370123.1 2053517 g8705 i0 50 0.417827298050139 50 25 41.8 0 162 13 1 50 MCB0370123.1 hypothetical protein [Bdellovibrionales bacterium] diamond 150 62.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27010191 27010191 PRJNA1247234_P_NODE_21662_length_251_cov_0.876404_g21506_i0 PRJNA1247234 21662 251 0.876404 2.19977404 Bdellovibrio sp. HAGR 28201 Bacteria Bacteria 122 1.27e-30   NR BFD67524.1 3113895 g21506 i0 95.2 0.741035856573705 62 3 74.1 0 2 187 420 481 BFD67524.1 phage terminase large subunit [Bdellovibrio sp. HAGR004] diamond 186 122 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HAGR004
30073455 30073455 PRJNA1247234_P_NODE_24132_length_247_cov_0.896552_g23976_i0 PRJNA1247234 24132 247 0.896552 2.21448344 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 145 7.179999999999999e-40   NR MCO5114072.1 2026715 g23976 i0 87.8 0.995951417004049 82 10 99.6 0 2 247 60 141 MCO5114072.1 agmatine deiminase family protein [Pseudobdellovibrionaceae bacterium] diamond 246 145 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30453002 30453002 PRJNA1247234_P_NODE_25573_length_245_cov_0.906977_g25417_i0 PRJNA1247234 25573 245 0.906977 2.22209365 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 89.4 1.5e-18   NR MCO5112569.1 2026715 g25417 i0 91.8 0.6 49 4 60 0 245 99 183 231 MCO5112569.1 ABC transporter permease [Pseudobdellovibrionaceae bacterium] diamond 147 89.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30831818 30831818 PRJNA1247234_P_NODE_24834_length_246_cov_0.901734_g24678_i0 PRJNA1247234 24834 246 0.901734 2.21826564 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 142 1.11e-38   NR MCO5113033.1 2026715 g24678 i0 81.5 0.98780487804878 81 15 98.8 0 244 2 154 234 MCO5113033.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 243 142 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31906888 31906888 PRJNA1247234_P_NODE_20557_length_253_cov_0.866667_g20401_i0 PRJNA1247234 20557 253 0.866667 2.19266751 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 87 3.85e-18   NR MCO5113716.1 2026715 g20401 i0 90.9 0.521739130434783 44 4 52.2 0 1 132 281 324 MCO5113716.1 nitronate monooxygenase [Pseudobdellovibrionaceae bacterium] diamond 132 87 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32571562 32571562 PRJNA1247234_P_NODE_25459_length_245_cov_0.906977_g25303_i0 PRJNA1247234 25459 245 0.906977 2.22209365 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 157 1.23e-46   NR MCO5114477.1 2026715 g25303 i0 91.4 0.991836734693878 81 7 99.2 0 245 3 121 201 MCO5114477.1 ribonuclease HII [Pseudobdellovibrionaceae bacterium] diamond 243 157 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;