RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1247234", tax_kingdom = "Bacillati" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1247234 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27073555 27073555 PRJNA1247234_P_NODE_26602_length_244_cov_0.912281_g26446_i0 PRJNA1247234 26602 244 0.912281 2.22596564 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 135 4.58e-36   NR MFA5507327.1 3107663 g26446 i0 79 0.995901639344262 81 17 99.6 0 1 243 255 335 MFA5507327.1 Zn-dependent hydrolase [Vulcanimicrobiota bacterium] diamond 243 135 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
29410309 29410309 PRJNA1247234_P_NODE_27689_length_242_cov_0.923077_g27533_i0 PRJNA1247234 27689 242 0.923077 2.23384634 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 70.5 6.23e-12   NR MFA5504822.1 3107663 g27533 i0 80 0.495867768595041 40 8 49.6 0 121 2 1 40 MFA5504822.1 DEAD/DEAH box helicase [Vulcanimicrobiota bacterium] diamond 120 70.5 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
29599591 29599591 PRJNA1247234_P_NODE_21090_length_252_cov_0.871508_g20934_i0 PRJNA1247234 21090 252 0.871508 2.19620016 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 164 7.13e-46   NR MFA5506859.1 3107663 g20934 i0 90.4 0.988095238095238 83 8 98.8 0 2 250 273 355 MFA5506859.1 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase family protein [Vulcanimicrobiota bacterium] diamond 249 164 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;