RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1247234", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA1247234 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10555754 10555754 PRJNA1247234_P_NODE_8149_length_370_cov_1.575758_g7993_i0 PRJNA1247234 8149 370 1.575758 5.8303046 Bacillati 1783272 Bacteria Bacteria 224 6.669999999999999e-68   NR CDF12220.1 1262906 g7993 i0 90.2 4.92972972972973 122 12 98.9 0 3 368 383 504 CDF12220.1 elongation factor 4 [Mycoplasma sp. CAG:776] diamond 1824 224 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. CAG:776
26946947 26946947 PRJNA1247234_P_NODE_21882_length_251_cov_0.876404_g21726_i0 PRJNA1247234 21882 251 0.876404 2.19977404 Acholeplasmatales bacterium 2053494 Bacteria Bacteria 43.1 0.0316   NR MCR5787038.1 2053494 g21726 i0 40.3 0.800796812749004 67 37 80.1 2 22 222 294 357 MCR5787038.1 leucine-rich repeat protein [Acholeplasmatales bacterium] diamond 201 43.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales     Acholeplasmatales bacterium
27674013 27674013 PRJNA1247234_P_NODE_6684_length_402_cov_0.948328_g6528_i0 PRJNA1247234 6684 402 0.948328 3.81227856 Mycoplasma sp. CAG:776 1262906 Bacteria Bacteria 241 3.92e-74   NR CDF12185.1 1262906 g6528 i0 84.2 0.992537313432836 133 21 99.3 0 401 3 379 511 CDF12185.1 aspartate--tRNA ligase 1 [Mycoplasma sp. CAG:776] diamond 399 241 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. CAG:776
32255299 32255299 PRJNA1247234_P_NODE_24658_length_246_cov_1.352601_g24502_i0 PRJNA1247234 24658 246 1.352601 3.32739846 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 149 6.0799999999999986e-43   NR MCI6931528.1 2231116 g24502 i0 95.1 5 82 4 100 0 246 1 109 190 MCI6931528.1 ABC transporter ATP-binding protein [Mycoplasmatota bacterium] diamond 1230 149 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;