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contig_metadata

15 rows where bioproject = "PRJNA1247234" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 15 ✖

bioproject 1

  • PRJNA1247234 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1625970 1625970 PRJNA1247234_P_NODE_12742_length_310_cov_1.645570_g12586_i0 PRJNA1247234 12742 310 1.64557 5.101267 Lobosphaera incisa 312850 Plants Plants 422 1.92e-113   NTclustered gi|725539263|gb|KM821265.1| 312850 g12586 i0 91.195 130.351612903226 318 17 100 7 1 310 136438 136752 Lobosphaera incisa chloroplast, complete genome blastn 40409 422 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Lobosphaera Lobosphaera incisa
2902203 2902203 PRJNA1247234_P_NODE_17083_length_274_cov_1.830846_g16927_i0 PRJNA1247234 17083 274 1.830846 5.01651804 Paradoxia multiseta 249350 Plants Plants 442 1.2799999999999994e-119   NTclustered gi|723457039|ref|NC_025540.1| 249350 g16927 i0 95.985 76.8394160583942 274 7 100 3 1 274 156633 156902 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 21054 442 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
4879799 4879799 PRJNA1247234_P_NODE_2364_length_623_cov_4.325455_g2216_i0 PRJNA1247234 2364 623 4.325455 26.94758465 Coccomyxa 41891 Plants Plants 924 0   NTclustered gi|1601875646|gb|MK694759.1| 2315456 g2216 i0 93.471 100.288924558587 628 31 100 8 1 623 4546 3924 Coccomyxa sp. Obi small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 62480 924 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
5454941 5454941 PRJNA1247234_P_NODE_24845_length_246_cov_0.901734_g24689_i0 PRJNA1247234 24845 246 0.901734 2.21826564 Coccomyxa sp. Obi 2315456 Plants Plants 407 4.12e-109   NTclustered gi|2106301938|dbj|AP025008.1| 2315456 g24689 i0 96.735 2.70731707317073 245 7 99 1 3 246 11027 11271 Coccomyxa sp. Obi chloroplast DNA, complete genome blastn 666 407 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
6154394 6154394 PRJNA1247234_P_NODE_15845_length_283_cov_2.352381_g15689_i0 PRJNA1247234 15845 283 2.352381 6.65723823 Trebouxiophyceae 75966 Plants Plants 523 4.5999999999999983e-144   NTclustered gi|359385265|emb|FR865679.1| 3082 g15689 i0 100 100.028268551237 283 0 100 0 1 283 347 65 'Chlorella' saccharophila genomic DNA containing 18S rRNA gene, ITS1, culture collection CCAP 211/60 blastn 28308 523 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium saccharophilum
6729051 6729051 PRJNA1247234_P_NODE_10786_length_331_cov_9.701550_g10630_i0 PRJNA1247234 10786 331 9.70155 32.1121305 Coccomyxa subellipsoidea 248742 Plants Plants 604 1.9099999999999992e-168   NTclustered gi|1360638125|gb|AC277041.1| 574566 g10630 i0 99.697 63.6283987915408 330 1 99 0 2 331 39846 39517 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 21061 604 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
8004723 8004723 PRJNA1247234_P_NODE_20087_length_253_cov_0.866667_g19931_i0 PRJNA1247234 20087 253 0.866667 2.19266751 Paradoxia multiseta 249350 Plants Plants 320 5.7e-83   NTclustered gi|723457039|ref|NC_025540.1| 249350 g19931 i0 96.859 2.25691699604743 191 6 75 0 4 194 77650 77460 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 571 320 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
13105103 13105103 PRJNA1247234_P_NODE_10071_length_341_cov_1.160448_g9915_i0 PRJNA1247234 10071 341 1.160448 3.95712768 Coccomyxa subellipsoidea 248742 Plants Plants 311 4.82e-80   NTclustered gi|545371217|ref|XM_005650135.1| 574566 g9915 i0 88.627 0.747800586510264 255 29 75 0 1 255 1185 931 Coccomyxa subellipsoidea C-169 Aminomethyltransferase folate-binding domain-containing protein partial mRNA blastn 255 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
15654508 15654508 PRJNA1247234_P_NODE_24973_length_246_cov_0.901734_g24817_i0 PRJNA1247234 24973 246 0.901734 2.21826564 Coccomyxa subellipsoidea 248742 Plants Plants 198 2.7e-46   NTclustered gi|545374899|ref|XM_005651627.1| 574566 g24817 i0 92.143 0.991869918699187 140 11 57 0 107 246 2210 2071 Coccomyxa subellipsoidea C-169 acetyl-CoA synthetase-like protein partial mRNA blastn 244 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
17629449 17629449 PRJNA1247234_P_NODE_1914_length_681_cov_2.465461_g1777_i0 PRJNA1247234 1914 681 2.465461 16.78978941 Chlorellales 35460 Plants Plants 1238 0   NTclustered gi|723457039|ref|NC_025540.1| 249350 g1777 i0 99.558 109.660792951542 679 3 99 0 1 679 2883 3561 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 74679 1243 0.99597747385358 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
18203105 18203105 PRJNA1247234_P_NODE_18975_length_260_cov_1.673797_g18819_i0 PRJNA1247234 18975 260 1.673797 4.3518722 uncultured Xylochloris 1240681 Plants Plants 481 2.55e-131   NTclustered gi|1604999876|gb|MH807086.1| 1240681 g18819 i0 100 100.046153846154 260 0 100 0 1 260 350 91 Uncultured Xylochloris clone GJF_0cmS_K30 18S ribosomal RNA gene, partial sequence blastn 26012 481 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Xylochloris
20177863 20177863 PRJNA1247234_P_NODE_23276_length_248_cov_3.565714_g23120_i0 PRJNA1247234 23276 248 3.565714 8.84297072 Coccomyxaceae 35472 Plants Plants 448 2.4499999999999996e-121   NTclustered gi|723457039|ref|NC_025540.1| 249350 g23120 i0 99.592 143.395161290323 245 1 99 0 4 248 2143 1899 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 35562 448 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
23304010 23304010 PRJNA1247234_P_NODE_8959_length_357_cov_2.961268_g8803_i0 PRJNA1247234 8959 357 2.961268 10.57172676 Chloroidium ellipsoideum 63676 Plants Plants 394 4.87e-105   NTclustered gi|1169296931|gb|KY364701.1| 63676 g8803 i0 86.685 23.9271708683473 368 33 100 13 1 357 5749 5387 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 8542 394 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
27597335 27597335 PRJNA1247234_P_NODE_14104_length_298_cov_1.040000_g13948_i0 PRJNA1247234 14104 298 1.04 3.0992 Coccomyxa 41891 Plants Plants 179 1.93e-51   NR XP_005650226.1 574566 g13948 i0 89.2 1.91275167785235 93 10 93.6 0 18 296 66 158 XP_005650226.1 cytochrome P450 [Coccomyxa subellipsoidea C-169] diamond 570 180 0.994444444444444 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
30041948 30041948 PRJNA1247234_P_NODE_17371_length_272_cov_1.557789_g17215_i0 PRJNA1247234 17371 272 1.557789 4.23718608 Coccomyxa sp. Obi 2315456 Plants Plants 169 1.93e-51   NR BDA49585.1 2315456 g17215 i0 90 0.992647058823529 90 9 99.3 0 1 270 77 166 BDA49585.1 hypothetical protein COCOBI_14-2040 [Coccomyxa sp. Obi] diamond 270 169 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;