RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1247234", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1247234 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
351153 351153 PRJNA1247234_P_NODE_13841_length_300_cov_1.374449_g13685_i0 PRJNA1247234 13841 300 1.374449 4.123347 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 521 1.7699999999999996e-143   NTclustered gi|325194684|emb|FR825494.1| 890382 g13685 i0 98 76.9933333333333 300 6 100 0 1 300 94 393 Albugo laibachii Nc14, genomic contig CONTIG_2365_NC14_v4_847_33331 blastn 23098 521 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18203146 18203146 PRJNA1247234_P_NODE_20895_length_252_cov_0.871508_g20739_i0 PRJNA1247234 20895 252 0.871508 2.19620016 Phytophthora sansomeana 555429 SAR_Eukaryotes SAR_Eukaryotes 368 2e-97   NTclustered gi|1770692515|ref|NC_045089.1| 555429 g20739 i0 93.548 99.1150793650794 248 15 98 1 4 250 187 434 Phytophthora sansomeana mitochondrion, complete genome blastn 24977 368 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sansomeana
23303601 23303601 PRJNA1247234_P_NODE_10559_length_335_cov_1.095420_g10403_i0 PRJNA1247234 10559 335 1.09542 3.669657 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 614 3.209999999999999e-171   NTclustered gi|33520224|gb|AY273969.1| 123356 g10403 i0 99.701 100.002985074627 335 1 100 0 1 335 208 542 Hyaloperonospora parasitica large subunit ribosomal RNA gene, partial sequence blastn 33501 614 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;