RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1247234", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1247234 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20753165 20753165 PRJNA1247234_P_NODE_7517_length_383_cov_1.006452_g7361_i0 PRJNA1247234 7517 383 1.006452 3.85471116 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 708 0   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g7361 i0 100 3.16187989556136 383 0 100 0 1 383 452 70 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 1211 708 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
21453573 21453573 PRJNA1247234_P_NODE_24357_length_247_cov_0.896552_g24201_i0 PRJNA1247234 24357 247 0.896552 2.21448344 Glissomonadida 1238681 SAR_Eukaryotes SAR_Eukaryotes 455 1.4600000000000002e-123   NTclustered gi|2030163897|gb|MZ044034.1| 1808984 g24201 i0 100 19.7773279352227 246 0 99 0 1 246 756 511 Rosculus terrestris isolate S14D1 small subunit ribosomal RNA gene, partial sequence blastn 4885 455 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus terrestris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;