RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1247234", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1247234 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4879742 4879742 PRJNA1247234_P_NODE_17204_length_273_cov_1.950000_g17048_i0 PRJNA1247234 17204 273 1.95 5.3235 Metazoa 33208 Platyhelminthes Platyhelminthes 505 1.6e-138   NTclustered gi|60687563|gb|AY914894.1| 6182 g17048 i0 100 100 273 0 100 0 1 273 147 419 Schistosoma japonicum unknown mRNA blastn 27300 505 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
30263431 30263431 PRJNA1247234_P_NODE_17372_length_272_cov_1.542714_g17216_i0 PRJNA1247234 17372 272 1.542714 4.19618208 Echinococcus granulosus 6210 Platyhelminthes Platyhelminthes 56.2 9.35e-7   NR XP_024355580.1 6210 g17216 i0 37.4 2.00735294117647 91 56 99.3 1 272 3 263 353 XP_024355580.1 Programmed cell death 6-interacting protein [Echinococcus granulosus] diamond 546 56.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
31165637 31165637 PRJNA1247234_P_NODE_1195_length_826_cov_4.657371_g1088_i0 PRJNA1247234 1195 826 4.657371 38.46988446 root 1 Root_unresolved Root_unresolved 512 8.89e-181   NR AAD11530.1 6162 g1088 i0 89.3 316.917675544794 272 29 98.8 0 817 2 5 276 AAD11530.1 actin [Girardia tigrina] diamond 261774 516 0.992248062015504 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Girardia Girardia tigrina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;