RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1247234", tax_clade = "Opisthokonta" and tax_phylum = "Annelida"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1247234 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18203311 18203311 PRJNA1247234_P_NODE_4595_length_469_cov_1.000000_g4441_i0 PRJNA1247234 4595 469 1 4.69 Owenia fusiformis 6347 Annelida Annelida 136 6.3e-36   NR CAH1798522.1 6347 g4441 i0 47.7 0.978678038379531 153 72 92.8 4 437 3 51 203 CAH1798522.1 unnamed protein product, partial [Owenia fusiformis] diamond 459 136 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
24577766 24577766 PRJNA1247234_P_NODE_21780_length_251_cov_0.876404_g21624_i0 PRJNA1247234 21780 251 0.876404 2.19977404 Hirudo verbana 311461 Annelida Annelida 54.7 0.006   NTclustered gi|2918369614|emb|OZ237780.1| 311461 g21624 i0 100 1.67729083665339 29 0 12 0 1 29 258949 258921 Hirudo verbana genome assembly, chromosome: 2 blastn 421 54.7 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Hirudinida Hirudinidae Hirudo Hirudo verbana
28210392 28210392 PRJNA1247234_P_NODE_26946_length_243_cov_0.917647_g26790_i0 PRJNA1247234 26946 243 0.917647 2.22988221 Owenia fusiformis 6347 Annelida Annelida 54.7 3.29e-7   NR CAH1777403.1 6347 g26790 i0 75.9 1.04938271604938 29 7 35.8 0 2 88 71 99 CAH1777403.1 unnamed protein product, partial [Owenia fusiformis] diamond 255 55.1 0.992740471869329 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;