RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1247234", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1247234 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26820621 26820621 PRJNA1247234_P_NODE_26521_length_244_cov_0.912281_g26365_i0 PRJNA1247234 26521 244 0.912281 2.22596564 uncultured Fibrobacter sp. 261512 Bacteria Bacteria 87 5.54e-20   NR WP_295051756.1 261512 g26365 i0 88.6 0.540983606557377 44 5 54.1 0 3 134 72 115 WP_295051756.1 dATP/dGTP diphosphohydrolase domain-containing protein [uncultured Fibrobacter sp.] diamond 132 87 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter uncultured Fibrobacter sp.
29820641 29820641 PRJNA1247234_P_NODE_4371_length_478_cov_1.901235_g4218_i0 PRJNA1247234 4371 478 1.901235 9.0879033 Fibrobacter sp. 35828 Bacteria Bacteria 72.4 1.51e-11   NR WP_405322979.1 35828 g4218 i0 52.6 0.476987447698745 76 27 45.2 3 470 255 303 373 WP_405322979.1 hypothetical protein [Fibrobacter sp.] diamond 228 72.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;