RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1245487" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1625909 1625909 PRJNA1245487_P_NODE_7662_length_444_cov_3.253369_g7325_i0 PRJNA1245487 7662 444 3.253369 14.44495836 Aminobacterium sp. MB27-C1 3070661 Bacteria Bacteria 353 1.05e-92   NTclustered gi|2569590977|gb|CP133089.1| 3070661 g7325 i0 81.375 86.3355855855856 451 68 100 14 1 444 1310364 1309923 Aminobacterium sp. MB27-C1 chromosome, complete genome blastn 38333 353 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium Aminobacterium sp. MB27-C1
4178289 4178289 PRJNA1245487_P_NODE_15904_length_282_cov_1.502392_g15566_i0 PRJNA1245487 15904 282 1.502392 4.23674544 Aminobacterium sp. MB27-C1 3070661 Bacteria Bacteria 279 1.1e-70   NTclustered gi|2569590977|gb|CP133089.1| 3070661 g15566 i0 84.698 94.6205673758865 281 41 99 2 1 281 1311597 1311319 Aminobacterium sp. MB27-C1 chromosome, complete genome blastn 26683 279 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium Aminobacterium sp. MB27-C1
5454475 5454475 PRJNA1245487_P_NODE_11225_length_351_cov_5.226619_g10887_i0 PRJNA1245487 11225 351 5.226619 18.34543269 Synergistales bacterium 2268201 Bacteria Bacteria 457 6.02e-124   NTclustered gi|2621703689|emb|OY762654.1| 2268201 g10887 i0 90.141 186.11396011396 355 29 100 6 1 351 236251 236603 MAG: Synergistales bacterium isolate e2a2af2a-30b9-47e3-8e03-f1be080e1666 genome assembly, chromosome: 1 blastn 65326 457 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;