RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1245487", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1245487 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7429203 7429203 PRJNA1245487_P_NODE_18006_length_262_cov_1.867725_g17668_i0 PRJNA1245487 18006 262 1.867725 4.8934395 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 398 2.6699999999999996e-106   NTclustered gi|937513727|gb|CP012850.1| 1353260 g17668 i0 94.231 99.1297709923664 260 15 99 0 1 260 848945 848686 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 25972 398 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
8004383 8004383 PRJNA1245487_P_NODE_17067_length_270_cov_1.888325_g16729_i0 PRJNA1245487 17067 270 1.888325 5.0984775 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 366 7.78e-97   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g16729 i0 91.76 54.6185185185185 267 16 97 5 8 270 1789649 1789385 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 14747 366 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;