contig_metadata
11 rows where bioproject = "PRJNA1245487" and tax_phylum = "Gemmatimonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1625886 | 1625886 | PRJNA1245487_P_NODE_4562_length_588_cov_2.132039_g4231_i0 | PRJNA1245487 | 4562 | 588 | 2.132039 | 12.53638932 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 621 | 3.53e-173 | NTclustered | gi|2874253789|emb|OY969773.1| | 412054 | g4231 | i0 | 85.93 | 83.3741496598639 | 597 | 66 | 100 | 17 | 1 | 588 | 422650 | 422063 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 | blastn | 49024 | 621 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 4178419 | 4178419 | PRJNA1245487_P_NODE_5764_length_520_cov_3.033557_g5428_i0 | PRJNA1245487 | 5764 | 520 | 3.033557 | 15.7744964 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 455 | 3.32e-123 | NTclustered | gi|2874253789|emb|OY969773.1| | 412054 | g5428 | i0 | 83.884 | 21.8923076923077 | 484 | 71 | 93 | 7 | 39 | 520 | 422518 | 422040 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 | blastn | 11384 | 455 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 11829677 | 11829677 | PRJNA1245487_P_NODE_15150_length_290_cov_2.755760_g14812_i0 | PRJNA1245487 | 15150 | 290 | 2.75576 | 7.991704 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 279 | 1.13e-70 | NTclustered | gi|2874253789|emb|OY969773.1| | 412054 | g14812 | i0 | 84.775 | 125.5 | 289 | 32 | 97 | 12 | 9 | 290 | 422321 | 422604 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 | blastn | 36395 | 279 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 14380276 | 14380276 | PRJNA1245487_P_NODE_21552_length_243_cov_4.664706_g21214_i0 | PRJNA1245487 | 21552 | 243 | 4.664706 | 11.33523558 | uncultured Gemmatimonadaceae bacterium | 246130 | Bacteria | Bacteria | 327 | 3.25e-85 | NTclustered | gi|2874253995|emb|OY970320.1| | 246130 | g21214 | i0 | 90.984 | 146.460905349794 | 244 | 21 | 100 | 1 | 1 | 243 | 233887 | 234130 | MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 | blastn | 35590 | 327 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | uncultured Gemmatimonadaceae bacterium | ||
| 16928257 | 16928257 | PRJNA1245487_P_NODE_14374_length_300_cov_1.700441_g14036_i0 | PRJNA1245487 | 14374 | 300 | 1.700441 | 5.101323 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 368 | 2.44e-97 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g14036 | i0 | 89 | 152.77 | 300 | 30 | 99 | 2 | 1 | 299 | 3043426 | 3043723 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 45831 | 368 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 18902883 | 18902883 | PRJNA1245487_P_NODE_19995_length_249_cov_3.176136_g19657_i0 | PRJNA1245487 | 19995 | 249 | 3.176136 | 7.90857864 | Gemmatimonas | 173479 | Bacteria | Bacteria | 222 | 1.62e-53 | NTclustered | gi|2874253789|emb|OY969773.1| | 412054 | g19657 | i0 | 83.534 | 142.473895582329 | 249 | 30 | 98 | 9 | 6 | 249 | 421060 | 420818 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 | blastn | 35476 | 222 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 19477271 | 19477271 | PRJNA1245487_P_NODE_3096_length_708_cov_3.703937_g2779_i0 | PRJNA1245487 | 3096 | 708 | 3.703937 | 26.22387396 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 821 | 0 | NTclustered | gi|2874253789|emb|OY969773.1| | 412054 | g2779 | i0 | 87.692 | 118.043785310734 | 715 | 75 | 100 | 13 | 1 | 708 | 421491 | 420783 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 | blastn | 83575 | 821 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 19477283 | 19477283 | PRJNA1245487_P_NODE_476_length_1487_cov_13.144272_g119_i1 | PRJNA1245487 | 476 | 1487 | 13.144272 | 195.45532464 | Gemmatimonas phototrophica | 1379270 | Bacteria | Bacteria | 2060 | 0 | NTclustered | gi|1015602748|gb|CP011454.1| | 1379270 | g119 | i1 | 92.057 | 159.454606590451 | 1473 | 103 | 99 | 12 | 1 | 1467 | 2074703 | 2076167 | Gemmatimonas phototrophica strain AP64, complete genome | blastn | 237109 | 2060 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas phototrophica | |
| 19477307 | 19477307 | PRJNA1245487_P_NODE_736_length_1258_cov_15.220253_g119_i2 | PRJNA1245487 | 736 | 1258 | 15.220253 | 191.47078274 | Gemmatimonas phototrophica | 1379270 | Bacteria | Bacteria | 1674 | 0 | NTclustered | gi|1015602748|gb|CP011454.1| | 1379270 | g119 | i2 | 91.673 | 310.301271860095 | 1225 | 77 | 97 | 17 | 39 | 1258 | 2075907 | 2074703 | Gemmatimonas phototrophica strain AP64, complete genome | blastn | 390359 | 1674 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas phototrophica | |
| 21453060 | 21453060 | PRJNA1245487_P_NODE_13657_length_310_cov_2.932489_g13319_i0 | PRJNA1245487 | 13657 | 310 | 2.932489 | 9.0907159 | root | 1 | Root_unresolved | Root_unresolved | 300 | 9.37e-77 | NTclustered | gi|470475286|ref|NR_076270.1| | 173480 | g13319 | i0 | 84.395 | 67.5741935483871 | 314 | 40 | 100 | 8 | 1 | 310 | 331 | 23 | Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence | blastn | 20948 | 300 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas aurantiaca | |
| 27453011 | 27453011 | PRJNA1245487_P_NODE_15563_length_286_cov_1.276995_g15225_i0 | PRJNA1245487 | 15563 | 286 | 1.276995 | 3.6522057 | Longimicrobium sp. | 2029185 | Bacteria | Bacteria | 44.7 | 0.0113 | NR | HLL82190.1 | 2029185 | g15225 | i0 | 34.1 | 0.891608391608392 | 85 | 51 | 83.9 | 3 | 254 | 15 | 141 | 225 | HLL82190.1 hypothetical protein [Longimicrobium sp.] | diamond | 255 | 44.7 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiaceae | Longimicrobium | Longimicrobium sp. |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;