RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1245487", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 10 ✖

tax_kingdom 1

  • Pseudomonadati · 10 ✖

bioproject 1

  • PRJNA1245487 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
351069 351069 PRJNA1245487_P_NODE_8341_length_423_cov_1.262857_g8003_i0 PRJNA1245487 8341 423 1.262857 5.34188511 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 435 3.46e-117   NTclustered gi|2575803239|emb|OY729416.1| 2202153 g8003 i0 86.139 123.307328605201 404 54 96 2 1 404 77048 76647 MAG: Thermodesulfobacteriota bacterium isolate ba02c5ff-97d3-4768-ae28-618c4039653d genome assembly, chromosome: 1 blastn 52159 435 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
9279266 9279266 PRJNA1245487_P_NODE_14008_length_305_cov_1.715517_g13670_i0 PRJNA1245487 14008 305 1.715517 5.23232685 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 292 1.54e-74   NTclustered gi|2891482145|emb|OZ219878.1| 2202153 g13670 i0 86.029 210.4 272 38 89 0 34 305 213853 213582 MAG: Thermodesulfobacteriota bacterium isolate 5b8d878f-b741-4c1d-a9b4-bc29eff46044 genome assembly, chromosome: 1 blastn 64172 292 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
16928424 16928424 PRJNA1245487_P_NODE_7034_length_466_cov_2.071247_g6698_i0 PRJNA1245487 7034 466 2.071247 9.65201102 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 575 2.1699999999999994e-159   NTclustered gi|2575803239|emb|OY729416.1| 2202153 g6698 i0 89.079 154.534334763948 467 46 100 4 1 466 76380 75918 MAG: Thermodesulfobacteriota bacterium isolate ba02c5ff-97d3-4768-ae28-618c4039653d genome assembly, chromosome: 1 blastn 72013 575 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
17628953 17628953 PRJNA1245487_P_NODE_10134_length_374_cov_2.897010_g9796_i0 PRJNA1245487 10134 374 2.89701 10.8348174 Desulfocarbo indianensis 1348163 Bacteria Bacteria 259 5.960000000000001e-85   NR KMY65383.1 1348163 g9796 i0 100 0.994652406417112 124 0 99.5 0 372 1 141 264 KMY65383.1 CoA-transferase, partial [Desulfocarbo indianensis] diamond 372 259 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis
26756903 26756903 PRJNA1245487_P_NODE_7421_length_452_cov_3.820580_g7085_i0 PRJNA1245487 7421 452 3.82058 17.2690216 Desulfocarbo indianensis 1348163 Bacteria Bacteria 300 8.58e-102   NR KMY65487.1 1348163 g7085 i0 99.3 0.995575221238938 150 1 99.6 0 1 450 55 204 KMY65487.1 hypothetical protein AAU61_22005 [Desulfocarbo indianensis] diamond 450 300 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis
28115746 28115746 PRJNA1245487_P_NODE_6725_length_478_cov_1.540741_g6389_i0 PRJNA1245487 6725 478 1.540741 7.36474198 Desulfocarbo indianensis 1348163 Bacteria Bacteria 234 4.450000000000001e-77   NR KMY65275.1 1348163 g6389 i0 100 0.702928870292887 112 0 70.3 0 478 143 5 116 KMY65275.1 hypothetical protein AAU61_23110 [Desulfocarbo indianensis] diamond 336 234 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis
28526506 28526506 PRJNA1245487_P_NODE_15827_length_283_cov_1.447619_g15489_i0 PRJNA1245487 15827 283 1.447619 4.09676177 Desulfocarbo indianensis 1348163 Bacteria Bacteria 195 5.54e-62   NR KMY65216.1 1348163 g15489 i0 100 0.996466431095406 94 0 99.6 0 2 283 43 136 KMY65216.1 hypothetical protein AAU61_23415, partial [Desulfocarbo indianensis] diamond 282 195 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis
28652660 28652660 PRJNA1245487_P_NODE_17747_length_264_cov_2.785340_g17409_i0 PRJNA1245487 17747 264 2.78534 7.3532976 Desulfocarbo indianensis 1348163 Bacteria Bacteria 144 3.7399999999999997e-42   NR KMY65284.1 1348163 g17409 i0 100 0.806818181818182 71 0 80.7 0 51 263 1 71 KMY65284.1 hypothetical protein AAU61_23065 [Desulfocarbo indianensis] diamond 213 144 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis
32001800 32001800 PRJNA1245487_P_NODE_3818_length_643_cov_3.028070_g3491_i0 PRJNA1245487 3818 643 3.02807 19.4704901 Desulfocarbo indianensis 1348163 Bacteria Bacteria 267 1.26e-88   NR KMY65461.1 1348163 g3491 i0 100 0.643856920684292 138 0 64.4 0 639 226 1 138 KMY65461.1 hypothetical protein AAU61_22145 [Desulfocarbo indianensis] diamond 414 267 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis
32823215 32823215 PRJNA1245487_P_NODE_14400_length_299_cov_5.938053_g14062_i0 PRJNA1245487 14400 299 5.938053 17.75477847 Desulfocarbo indianensis 1348163 Bacteria Bacteria 145 3.3999999999999993e-43   NR KMY65248.1 1348163 g14062 i0 97.2 0.712374581939799 71 2 71.2 0 281 69 1 71 KMY65248.1 hypothetical protein AAU61_23245 [Desulfocarbo indianensis] diamond 213 145 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;