RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1245487", tax_kingdom = "Fungi" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1245487 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5454506 5454506 PRJNA1245487_P_NODE_13525_length_312_cov_1.916318_g13187_i0 PRJNA1245487 13525 312 1.916318 5.97891216 uncultured Gurleya 1260772 Fungi Fungi 106 2.21e-18   NTclustered gi|511487958|gb|JX898533.1| 1260772 g13187 i0 86 0.320512820512821 100 12 31 2 3 100 224 125 Uncultured Gurleya clone GMW_D01-12 28S ribosomal RNA gene, partial sequence blastn 100 106 1 Eukaryota Opisthokonta Fungi Microsporidia     Gurleyidae   uncultured Gurleya
18202775 18202775 PRJNA1245487_P_NODE_15815_length_283_cov_1.566667_g15477_i0 PRJNA1245487 15815 283 1.566667 4.43366761 Microsporidium sp. 4-YYS-2009d 639191 Fungi Fungi 462 1.02e-125   NTclustered gi|227016834|gb|FJ865224.1| 639191 g15477 i0 96.127 2.5017667844523 284 9 100 2 1 283 769 1051 Microsporidium sp. 4-YYS-2009d small subunit ribosomal RNA gene, partial sequence blastn 708 462 1 Eukaryota Opisthokonta Fungi Microsporidia       Microsporidium Microsporidium sp. 4-YYS-2009d

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;