contig_metadata
18 rows where bioproject = "PRJNA1245487", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2901999 | 2901999 | PRJNA1245487_P_NODE_23163_length_220_cov_5.897959_g22825_i0 | PRJNA1245487 | 23163 | 220 | 5.897959 | 12.9755098 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 368 | 1.6999999999999997e-97 | NTclustered | gi|226525317|gb|FJ872374.1| | 156588 | g22825 | i0 | 96.818 | 258.727272727273 | 220 | 7 | 100 | 0 | 1 | 220 | 4513 | 4294 | Uncultured Verrucomicrobia bacterium clone 184 genomic sequence | blastn | 56920 | 368 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 2902020 | 2902020 | PRJNA1245487_P_NODE_4423_length_596_cov_1.741874_g4093_i0 | PRJNA1245487 | 4423 | 596 | 1.741874 | 10.38156904 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 870 | 0 | NTclustered | gi|226525317|gb|FJ872374.1| | 156588 | g4093 | i0 | 93.132 | 281.511744966443 | 597 | 36 | 99 | 4 | 1 | 595 | 2905 | 3498 | Uncultured Verrucomicrobia bacterium clone 184 genomic sequence | blastn | 167781 | 870 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 4178359 | 4178359 | PRJNA1245487_P_NODE_20444_length_248_cov_0.891429_g20106_i0 | PRJNA1245487 | 20444 | 248 | 0.891429 | 2.21074392 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 154 | 5.98e-33 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g20106 | i0 | 80.383 | 7.19354838709677 | 209 | 35 | 83 | 6 | 43 | 248 | 3019067 | 3019272 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 1784 | 154 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 4178362 | 4178362 | PRJNA1245487_P_NODE_20584_length_247_cov_1.683908_g20246_i0 | PRJNA1245487 | 20584 | 247 | 1.683908 | 4.15925276 | Chthoniobacteraceae bacterium | 2811408 | Bacteria | Bacteria | 248 | 2.65e-61 | NTclustered | gi|2813917447|gb|CP170506.1| | 2811408 | g20246 | i0 | 84.706 | 31.9595141700405 | 255 | 31 | 100 | 2 | 1 | 247 | 3047988 | 3047734 | MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome | blastn | 7894 | 248 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Chthoniobacteraceae bacterium | ||
| 4178369 | 4178369 | PRJNA1245487_P_NODE_21324_length_244_cov_1.906433_g20986_i0 | PRJNA1245487 | 21324 | 244 | 1.906433 | 4.65169652 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 414 | 2.44e-111 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g20986 | i0 | 97.908 | 48.1967213114754 | 239 | 5 | 98 | 0 | 3 | 241 | 1224 | 1462 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 11760 | 414 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 4178386 | 4178386 | PRJNA1245487_P_NODE_22664_length_233_cov_2.087500_g22326_i0 | PRJNA1245487 | 22664 | 233 | 2.0875 | 4.863875 | Chthoniobacter flavus | 191863 | Bacteria | Bacteria | 329 | 8.6e-86 | NTclustered | gi|183579828|emb|AM905425.1| | 497964 | g22326 | i0 | 92.308 | 248.652360515021 | 234 | 14 | 99 | 4 | 1 | 232 | 1938 | 2169 | Chthoniobacter flavus 23S rRNA gene, strain Ellin428 | blastn | 57936 | 329 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Chthoniobacter | Chthoniobacter flavus | |
| 11829658 | 11829658 | PRJNA1245487_P_NODE_13690_length_310_cov_1.185654_g13352_i0 | PRJNA1245487 | 13690 | 310 | 1.185654 | 3.6755274 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 422 | 1.92e-113 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g13352 | i0 | 91.29 | 59.7096774193548 | 310 | 25 | 99 | 2 | 1 | 309 | 1322 | 1630 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 18510 | 422 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 11829679 | 11829679 | PRJNA1245487_P_NODE_15350_length_288_cov_2.316279_g15012_i0 | PRJNA1245487 | 15350 | 288 | 2.316279 | 6.67088352 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 342 | 1.4099999999999996e-89 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g15012 | i0 | 97.5 | 240.940972222222 | 200 | 5 | 69 | 0 | 89 | 288 | 1143 | 944 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 69391 | 342 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 14380172 | 14380172 | PRJNA1245487_P_NODE_12772_length_324_cov_2.494024_g12434_i0 | PRJNA1245487 | 12772 | 324 | 2.494024 | 8.08063776 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 372 | 2.06e-98 | NTclustered | gi|226525317|gb|FJ872374.1| | 156588 | g12434 | i0 | 94.65 | 157.296296296296 | 243 | 7 | 74 | 5 | 1 | 240 | 4502 | 4741 | Uncultured Verrucomicrobia bacterium clone 184 genomic sequence | blastn | 50964 | 372 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 14380226 | 14380226 | PRJNA1245487_P_NODE_17052_length_270_cov_2.472081_g16714_i0 | PRJNA1245487 | 17052 | 270 | 2.472081 | 6.6746187 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 370 | 6.02e-98 | NTclustered | gi|2874253952|emb|OY970277.1| | 412056 | g16714 | i0 | 94.561 | 305.02962962963 | 239 | 13 | 89 | 0 | 12 | 250 | 2749863 | 2749625 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 | blastn | 82358 | 370 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 15654083 | 15654083 | PRJNA1245487_P_NODE_16433_length_276_cov_2.034483_g16095_i0 | PRJNA1245487 | 16433 | 276 | 2.034483 | 5.61517308 | Candidatus Xiphinematobacter sp. | 1903058 | Bacteria | Bacteria | 340 | 4.84e-89 | NTclustered | gi|1966854496|gb|CP068475.1| | 1903058 | g16095 | i0 | 88.889 | 128.445652173913 | 279 | 27 | 100 | 4 | 1 | 276 | 915004 | 915281 | MAG: Candidatus Xiphinematobacter sp. isolate P21 chromosome, complete genome | blastn | 35451 | 340 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Candidatus Xiphinematobacter | Candidatus Xiphinematobacter sp. | |||
| 16928422 | 16928422 | PRJNA1245487_P_NODE_6854_length_473_cov_1.915000_g6518_i0 | PRJNA1245487 | 6854 | 473 | 1.915 | 9.05795 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 697 | 0 | NTclustered | gi|226525317|gb|FJ872374.1| | 156588 | g6518 | i0 | 93.249 | 225.517970401691 | 474 | 30 | 100 | 2 | 1 | 473 | 2301 | 2773 | Uncultured Verrucomicrobia bacterium clone 184 genomic sequence | blastn | 106670 | 697 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 18202876 | 18202876 | PRJNA1245487_P_NODE_23575_length_199_cov_5.404762_g23237_i0 | PRJNA1245487 | 23575 | 199 | 5.404762 | 10.75547638 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 281 | 2.02e-71 | NTclustered | gi|2874253952|emb|OY970277.1| | 412056 | g23237 | i0 | 92.965 | 113.412060301508 | 199 | 5 | 100 | 5 | 1 | 199 | 2749170 | 2749359 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 | blastn | 22569 | 281 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 19477176 | 19477176 | PRJNA1245487_P_NODE_17216_length_269_cov_1.020408_g16878_i0 | PRJNA1245487 | 17216 | 269 | 1.020408 | 2.74489752 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 455 | 1.6100000000000002e-123 | NTclustered | gi|2874253768|emb|OY969715.1| | 412056 | g16878 | i0 | 97.048 | 123.795539033457 | 271 | 6 | 100 | 2 | 1 | 269 | 915652 | 915922 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 | blastn | 33301 | 455 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 19477284 | 19477284 | PRJNA1245487_P_NODE_5256_length_547_cov_2.194093_g4921_i0 | PRJNA1245487 | 5256 | 547 | 2.194093 | 12.00168871 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 905 | 0 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g4921 | i0 | 96.533 | 251.563071297989 | 548 | 18 | 100 | 1 | 1 | 547 | 740 | 193 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 137605 | 905 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 22027777 | 22027777 | PRJNA1245487_P_NODE_12918_length_322_cov_1.184739_g12580_i0 | PRJNA1245487 | 12918 | 322 | 1.184739 | 3.81485958 | Verrucomicrobia bacterium IMCC26134 | 1637999 | Bacteria | Bacteria | 466 | 9.11e-127 | NTclustered | gi|807238858|gb|CP011265.1| | 1637999 | g12580 | i0 | 94.966 | 140.66149068323 | 298 | 13 | 92 | 2 | 27 | 322 | 1903479 | 1903776 | Verrucomicrobia bacterium IMCC26134, complete genome | blastn | 45293 | 466 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobia bacterium IMCC26134 | |||||
| 22027862 | 22027862 | PRJNA1245487_P_NODE_19758_length_250_cov_2.163842_g19420_i0 | PRJNA1245487 | 19758 | 250 | 2.163842 | 5.409605 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 339 | 1.55e-88 | NTclustered | gi|2874254020|emb|OY970345.1| | 412056 | g19420 | i0 | 91.27 | 19.1 | 252 | 17 | 100 | 4 | 1 | 250 | 3894779 | 3894531 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 | blastn | 4775 | 339 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 22027876 | 22027876 | PRJNA1245487_P_NODE_21038_length_245_cov_3.168605_g20700_i0 | PRJNA1245487 | 21038 | 245 | 3.168605 | 7.76308225 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 348 | 2.5200000000000005e-91 | NTclustered | gi|2874254020|emb|OY970345.1| | 412056 | g20700 | i0 | 92.245 | 222.379591836735 | 245 | 19 | 100 | 0 | 1 | 245 | 3894728 | 3894484 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 | blastn | 54483 | 348 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;