RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1245487", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1051344 1051344 PRJNA1245487_P_NODE_19221_length_252_cov_2.536313_g18883_i0 PRJNA1245487 19221 252 2.536313 6.39150876 Candidatus Protochlamydia 282132 Bacteria Bacteria 427 3.2499999999999993e-115   NTclustered gi|1691252667|emb|BX908798.2| 264201 g18883 i0 97.222 139.162698412698 252 7 100 0 1 252 1250350 1250601 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 35069 427 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
13104952 13104952 PRJNA1245487_P_NODE_16451_length_276_cov_1.536946_g16113_i0 PRJNA1245487 16451 276 1.536946 4.24197096 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 350 8.04e-92   NTclustered gi|2874253811|emb|OY969795.1| 464461 g16113 i0 89.493 278.039855072464 276 29 100 0 1 276 653857 653582 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 76739 350 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
20752536 20752536 PRJNA1245487_P_NODE_12657_length_326_cov_1.553360_g12319_i0 PRJNA1245487 12657 326 1.55336 5.0639536 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 455 1.9999999999999998e-123   NTclustered gi|2874253811|emb|OY969795.1| 464461 g12319 i0 93.729 70.1165644171779 303 19 93 0 1 303 653865 654167 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 22858 455 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;