RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1245487" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28652659 28652659 PRJNA1245487_P_NODE_15007_length_292_cov_1.776256_g14669_i0 PRJNA1245487 15007 292 1.776256 5.18666752 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 148 2.43e-41   NR XP_013760592.1 461836 g14669 i0 75.6 0.924657534246575 90 22 92.5 0 9 278 149 238 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 270 148 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29094787 29094787 PRJNA1245487_P_NODE_10508_length_366_cov_2.105802_g10170_i0 PRJNA1245487 10508 366 2.105802 7.70723532 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 53.5 2.21e-5   NR XP_013760592.1 461836 g10170 i0 68.4 0.311475409836066 38 12 31.1 0 1 114 302 339 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 114 53.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32778129 32778129 PRJNA1245487_P_NODE_18080_length_261_cov_2.542553_g17742_i0 PRJNA1245487 18080 261 2.542553 6.63606333 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92 6.8e-20   NR XP_013760592.1 461836 g17742 i0 67.6 2.50574712643678 68 20 75.9 1 200 3 43 110 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 654 92.8 0.991379310344828 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;