RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1245487", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA1245487 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8004394 8004394 PRJNA1245487_P_NODE_17827_length_264_cov_0.905759_g17489_i0 PRJNA1245487 17827 264 0.905759 2.39120376 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 147 1.08e-30   NTclustered gi|145386791|gb|EF216916.1| 136459 g17489 i0 86.923 42.6590909090909 130 17 49 0 134 263 948 1077 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 11262 147 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
10555197 10555197 PRJNA1245487_P_NODE_18889_length_254_cov_1.723757_g18551_i0 PRJNA1245487 18889 254 1.723757 4.37834278 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 143 1.33e-29   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g18551 i0 98.75 14.5433070866142 80 1 31 0 1 80 887 808 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 3694 143 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
15078873 15078873 PRJNA1245487_P_NODE_16492_length_275_cov_5.168317_g16154_i0 PRJNA1245487 16492 275 5.168317 14.21287175 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 481 2.72e-131   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g16154 i0 98.188 61.2654545454545 276 4 100 1 1 275 579 304 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 16848 481 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
15654217 15654217 PRJNA1245487_P_NODE_9613_length_387_cov_1.850318_g9275_i0 PRJNA1245487 9613 387 1.850318 7.16073066 Heleopera steppica 3035462 Tubulinea other_Eukaryota 161 5.889999999999998e-35   NTclustered gi|2460876680|gb|OQ646056.1| 3035462 g9275 i0 78.309 21.2919896640827 272 41 70 12 1 271 4 258 Heleopera steppica isolate M3-1 small subunit ribosomal RNA gene, partial sequence blastn 8240 161 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Heleoperidae Heleopera Heleopera steppica
16353793 16353793 PRJNA1245487_P_NODE_19053_length_253_cov_1.144444_g18715_i0 PRJNA1245487 19053 253 1.144444 2.89544332 Vermamoeba 1260114 Tubulinea other_Eukaryota 468 1.92e-127   NTclustered gi|2463802139|gb|OQ678078.1| 5778 g18715 i0 100 99.9328063241107 253 0 100 0 1 253 17 269 Vermamoeba vermiformis isolate IQ5E small subunit ribosomal RNA gene, partial sequence blastn 25283 468 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19477193 19477193 PRJNA1245487_P_NODE_18116_length_261_cov_1.632979_g17778_i0 PRJNA1245487 18116 261 1.632979 4.26207519 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 483 7.12e-132   NTclustered gi|259595677|gb|FJ705341.1| 675832 g17778 i0 100 8.29501915708812 261 0 100 0 1 261 354 94 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 2165 483 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
24003396 24003396 PRJNA1245487_P_NODE_19999_length_249_cov_3.045455_g19661_i0 PRJNA1245487 19999 249 3.045455 7.58318295 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 355 1.53e-93   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g19661 i0 92.46 92.85140562249 252 14 100 4 1 249 1509 1758 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 23120 355 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;