RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1245487", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1245487 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2326564 2326564 PRJNA1245487_P_NODE_11362_length_349_cov_1.688406_g11024_i0 PRJNA1245487 11362 349 1.688406 5.89253694 Cochliopodium 313557 Discosea other_Eukaryota 645 1.1899999999999993e-180   NTclustered gi|659103902|gb|KJ569713.1| 313997 g11024 i0 100 60.3467048710602 349 0 100 0 1 349 1834 1486 Cochliopodium minus clone 1101 18S ribosomal RNA gene, partial sequence blastn 21061 645 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
11829754 11829754 PRJNA1245487_P_NODE_21130_length_245_cov_1.354651_g20792_i0 PRJNA1245487 21130 245 1.354651 3.31889495 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 153 3.47e-46   NR XP_004339588.1 1257118 g20792 i0 90 1.95918367346939 80 8 98 0 243 4 25 104 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 480 153 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20752647 20752647 PRJNA1245487_P_NODE_21397_length_244_cov_1.040936_g21059_i0 PRJNA1245487 21397 244 1.040936 2.53988384 Vannella sp. GERB 1002216 Discosea other_Eukaryota 381 2.4699999999999993e-101   NTclustered gi|327391626|gb|HM363624.1| 1002216 g21059 i0 94.737 102.30737704918 247 9 100 3 1 244 306 61 Vannella sp. GERB small subunit ribosomal RNA gene, partial sequence blastn 24963 381 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERB
25277329 25277329 PRJNA1245487_P_NODE_11360_length_349_cov_1.692029_g11022_i0 PRJNA1245487 11360 349 1.692029 5.90518121 Cochliopodium 313557 Discosea other_Eukaryota 645 1.1899999999999993e-180   NTclustered gi|659103902|gb|KJ569713.1| 313997 g11022 i0 100 64.458452722063 349 0 100 0 1 349 1252 904 Cochliopodium minus clone 1101 18S ribosomal RNA gene, partial sequence blastn 22496 645 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
30673767 30673767 PRJNA1245487_P_NODE_20333_length_248_cov_1.337143_g19995_i0 PRJNA1245487 20333 248 1.337143 3.31611464 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.8 1.31e-9   NR XP_004338931.1 1257118 g19995 i0 47.6 1.98387096774194 82 39 94.4 3 7 240 129 210 XP_004338931.1 glutathione stransferase [Acanthamoeba castellanii str. Neff] diamond 492 62.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32350042 32350042 PRJNA1245487_P_NODE_17939_length_263_cov_1.173684_g17601_i0 PRJNA1245487 17939 263 1.173684 3.08678892 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.6 0.00206   NR XP_004338620.1 1257118 g17601 i0 38.2 0.627376425855513 55 34 62.7 0 167 3 56 110 XP_004338620.1 PQQ enzyme repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 165 46.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;