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contig_metadata

32 rows where bioproject = "PRJNA1245487" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 32 ✖

bioproject 1

  • PRJNA1245487 · 32 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
351012 351012 PRJNA1245487_P_NODE_22901_length_229_cov_2.884615_g22563_i0 PRJNA1245487 22901 229 2.884615 6.60576835 Physariida sp. 2052664 Evosea other_Eukaryota 420 4.86e-113   NTclustered gi|1275019481|gb|MG429805.1| 2052664 g22563 i0 99.563 101.777292576419 229 1 100 0 1 229 187 415 Physariida sp. isolate s32058 small subunit ribosomal RNA gene, partial sequence blastn 23307 420 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida     Physariida sp.
2326564 2326564 PRJNA1245487_P_NODE_11362_length_349_cov_1.688406_g11024_i0 PRJNA1245487 11362 349 1.688406 5.89253694 Cochliopodium 313557 Discosea other_Eukaryota 645 1.1899999999999993e-180   NTclustered gi|659103902|gb|KJ569713.1| 313997 g11024 i0 100 60.3467048710602 349 0 100 0 1 349 1834 1486 Cochliopodium minus clone 1101 18S ribosomal RNA gene, partial sequence blastn 21061 645 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
2901935 2901935 PRJNA1245487_P_NODE_17963_length_262_cov_3.417989_g17625_i0 PRJNA1245487 17963 262 3.417989 8.95513118 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 366 7.52e-97   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g17625 i0 93.852 13.1908396946565 244 14 93 1 16 258 2946 2703 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3456 366 1 Eukaryota Amoebozoa             Amoebozoa sp.
2901993 2901993 PRJNA1245487_P_NODE_22483_length_235_cov_4.475309_g22145_i0 PRJNA1245487 22483 235 4.475309 10.51697615 Soliformovum irregulare 435424 Evosea other_Eukaryota 147 9.39e-31   NTclustered gi|381139238|emb|HE655045.1| 435424 g22145 i0 89.076 34.6723404255319 119 11 50 2 1 118 207 324 Soliformovum irregulare partial 28S rRNA gene, strain ATCC 26826 blastn 8148 147 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
4178283 4178283 PRJNA1245487_P_NODE_15124_length_290_cov_6.506912_g14786_i0 PRJNA1245487 15124 290 6.506912 18.8700448 Echinosteliopsis oligospora 1908696 Evosea other_Eukaryota 503 6.17e-138   NTclustered gi|1465309723|gb|MH809394.1| 1908696 g14786 i0 97.931 93.0620689655172 290 6 100 0 1 290 1076 1365 Echinosteliopsis oligospora isolate HH14-A2-1A small subunit ribosomal RNA gene, partial sequence blastn 26988 503 1 Eukaryota Amoebozoa   Evosea Eumycetozoa   Echinosteliopsidaceae Echinosteliopsis Echinosteliopsis oligospora
5454614 5454614 PRJNA1245487_P_NODE_22165_length_241_cov_2.625000_g21827_i0 PRJNA1245487 22165 241 2.625 6.32625 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 372 1.47e-98   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g21827 i0 94.606 8.14107883817427 241 12 100 1 1 241 3798 4037 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1962 372 1 Eukaryota Amoebozoa             Amoebozoa sp.
5454616 5454616 PRJNA1245487_P_NODE_22405_length_237_cov_2.103659_g22067_i0 PRJNA1245487 22405 237 2.103659 4.98567183 Echinosteliopsis oligospora 1908696 Evosea other_Eukaryota 303 5.32e-78   NTclustered gi|1465309723|gb|MH809394.1| 1908696 g22067 i0 91.818 0.928270042194093 220 14 92 4 1 218 1086 869 Echinosteliopsis oligospora isolate HH14-A2-1A small subunit ribosomal RNA gene, partial sequence blastn 220 303 1 Eukaryota Amoebozoa   Evosea Eumycetozoa   Echinosteliopsidaceae Echinosteliopsis Echinosteliopsis oligospora
8004394 8004394 PRJNA1245487_P_NODE_17827_length_264_cov_0.905759_g17489_i0 PRJNA1245487 17827 264 0.905759 2.39120376 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 147 1.08e-30   NTclustered gi|145386791|gb|EF216916.1| 136459 g17489 i0 86.923 42.6590909090909 130 17 49 0 134 263 948 1077 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 11262 147 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
8004503 8004503 PRJNA1245487_P_NODE_7047_length_465_cov_3.267857_g6711_i0 PRJNA1245487 7047 465 3.267857 15.19553505 Didymium clavus 289976 Evosea other_Eukaryota 704 0   NTclustered gi|2317681399|gb|OP650766.1| 289976 g6711 i0 94.017 98.4193548387097 468 22 100 5 1 465 745 281 Didymium clavus strain MA-Fungi 69756 small subunit ribosomal RNA gene, partial sequence blastn 45765 704 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium clavus
9279282 9279282 PRJNA1245487_P_NODE_15348_length_288_cov_2.376744_g15010_i0 PRJNA1245487 15348 288 2.376744 6.84502272 Echinosteliopsis oligospora 1908696 Evosea other_Eukaryota 427 3.7899999999999997e-115   NTclustered gi|1465309723|gb|MH809394.1| 1908696 g15010 i0 94.035 32.9375 285 12 99 1 4 288 1988 1709 Echinosteliopsis oligospora isolate HH14-A2-1A small subunit ribosomal RNA gene, partial sequence blastn 9486 427 1 Eukaryota Amoebozoa   Evosea Eumycetozoa   Echinosteliopsidaceae Echinosteliopsis Echinosteliopsis oligospora
9279324 9279324 PRJNA1245487_P_NODE_18408_length_258_cov_3.945946_g18070_i0 PRJNA1245487 18408 258 3.945946 10.18054068 Didymium spongiosum 289992 Evosea other_Eukaryota 250 7.76e-62   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g18070 i0 92.09 4.29457364341085 177 14 69 0 9 185 7637 7461 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1108 250 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
9279433 9279433 PRJNA1245487_P_NODE_7528_length_449_cov_1.257979_g7191_i0 PRJNA1245487 7528 449 1.257979 5.64832571 uncultured Soliformovum 2510342 Evosea other_Eukaryota 592 2.0699999999999998e-164   NTclustered gi|1564356923|gb|MK443523.1| 2510342 g7191 i0 97.143 43.1915367483296 350 10 78 0 1 350 76 425 Uncultured Soliformovum clone OTUA345 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 19393 592 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae   uncultured Soliformovum
9979640 9979640 PRJNA1245487_P_NODE_9448_length_392_cov_1.463950_g9110_i0 PRJNA1245487 9448 392 1.46395 5.738684 Didymiaceae 1115745 Evosea other_Eukaryota 486 8.669999999999999e-133   NTclustered gi|381140147|emb|HE655054.1| 1118895 g9110 i0 89.141 65.4617346938775 396 34 100 7 1 392 1815 1425 Diderma sp. It-K68 partial 28S rRNA gene, isolate It-K68 blastn 25661 488 0.995901639344262 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Diderma Diderma sp. It-K68
10555197 10555197 PRJNA1245487_P_NODE_18889_length_254_cov_1.723757_g18551_i0 PRJNA1245487 18889 254 1.723757 4.37834278 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 143 1.33e-29   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g18551 i0 98.75 14.5433070866142 80 1 31 0 1 80 887 808 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 3694 143 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
11829754 11829754 PRJNA1245487_P_NODE_21130_length_245_cov_1.354651_g20792_i0 PRJNA1245487 21130 245 1.354651 3.31889495 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 153 3.47e-46   NR XP_004339588.1 1257118 g20792 i0 90 1.95918367346939 80 8 98 0 243 4 25 104 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 480 153 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12529826 12529826 PRJNA1245487_P_NODE_10490_length_366_cov_5.030717_g10152_i0 PRJNA1245487 10490 366 5.030717 18.41242422 Physaraceae 1115744 Evosea other_Eukaryota 438 2.2799999999999995e-118   NTclustered gi|3221|emb|V01159.1| 5791 g10152 i0 89.296 9.46448087431694 355 30 95 6 18 366 2480 2128 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 3464 438 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
15078873 15078873 PRJNA1245487_P_NODE_16492_length_275_cov_5.168317_g16154_i0 PRJNA1245487 16492 275 5.168317 14.21287175 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 481 2.72e-131   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g16154 i0 98.188 61.2654545454545 276 4 100 1 1 275 579 304 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 16848 481 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
15654138 15654138 PRJNA1245487_P_NODE_21433_length_244_cov_0.912281_g21095_i0 PRJNA1245487 21433 244 0.912281 2.22596564 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 115 2.77e-21   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g21095 i0 78.061 46.2827868852459 196 33 78 9 4 194 4051 3861 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11293 115 1 Eukaryota Amoebozoa             Amoebozoa sp.
15654217 15654217 PRJNA1245487_P_NODE_9613_length_387_cov_1.850318_g9275_i0 PRJNA1245487 9613 387 1.850318 7.16073066 Heleopera steppica 3035462 Tubulinea other_Eukaryota 161 5.889999999999998e-35   NTclustered gi|2460876680|gb|OQ646056.1| 3035462 g9275 i0 78.309 21.2919896640827 272 41 70 12 1 271 4 258 Heleopera steppica isolate M3-1 small subunit ribosomal RNA gene, partial sequence blastn 8240 161 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Heleoperidae Heleopera Heleopera steppica
16353793 16353793 PRJNA1245487_P_NODE_19053_length_253_cov_1.144444_g18715_i0 PRJNA1245487 19053 253 1.144444 2.89544332 Vermamoeba 1260114 Tubulinea other_Eukaryota 468 1.92e-127   NTclustered gi|2463802139|gb|OQ678078.1| 5778 g18715 i0 100 99.9328063241107 253 0 100 0 1 253 17 269 Vermamoeba vermiformis isolate IQ5E small subunit ribosomal RNA gene, partial sequence blastn 25283 468 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16928294 16928294 PRJNA1245487_P_NODE_1734_length_909_cov_1.988038_g1462_i0 PRJNA1245487 1734 909 1.988038 18.07126542 Physarum melleum 289959 Evosea other_Eukaryota 1194 0   NTclustered gi|380864315|gb|JQ277926.1| 289959 g1462 i0 97.432 78.5522552255226 701 16 77 2 1 701 1062 364 Physarum melleum 18S ribosomal RNA gene, partial sequence blastn 71404 1194 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum melleum
18202741 18202741 PRJNA1245487_P_NODE_12695_length_325_cov_2.623016_g12357_i0 PRJNA1245487 12695 325 2.623016 8.524802 Physarum melleum 289959 Evosea other_Eukaryota 601 2.4199999999999993e-167   NTclustered gi|1297648212|gb|MG647897.1| 289959 g12357 i0 100 84.8307692307692 325 0 100 0 1 325 149 473 Physarum melleum isolate PlsTH67 small subunit ribosomal RNA gene, partial sequence blastn 27570 601 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum melleum
18202744 18202744 PRJNA1245487_P_NODE_12935_length_321_cov_3.096774_g12597_i0 PRJNA1245487 12935 321 3.096774 9.94064454 Physarum polycephalum 5791 Evosea other_Eukaryota 117 1.05e-21   NTclustered gi|3221|emb|V01159.1| 5791 g12597 i0 90 0.280373831775701 90 9 28 0 1 90 5717 5806 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 90 117 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
18902806 18902806 PRJNA1245487_P_NODE_15155_length_290_cov_2.552995_g14817_i0 PRJNA1245487 15155 290 2.552995 7.4036855 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 520 6.119999999999998e-143   NTclustered gi|441475833|emb|FN562425.4| 688089 g14817 i0 98.969 51.4172413793103 291 2 100 1 1 290 622 332 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 14911 520 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
19477193 19477193 PRJNA1245487_P_NODE_18116_length_261_cov_1.632979_g17778_i0 PRJNA1245487 18116 261 1.632979 4.26207519 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 483 7.12e-132   NTclustered gi|259595677|gb|FJ705341.1| 675832 g17778 i0 100 8.29501915708812 261 0 100 0 1 261 354 94 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 2165 483 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
20752647 20752647 PRJNA1245487_P_NODE_21397_length_244_cov_1.040936_g21059_i0 PRJNA1245487 21397 244 1.040936 2.53988384 Vannella sp. GERB 1002216 Discosea other_Eukaryota 381 2.4699999999999993e-101   NTclustered gi|327391626|gb|HM363624.1| 1002216 g21059 i0 94.737 102.30737704918 247 9 100 3 1 244 306 61 Vannella sp. GERB small subunit ribosomal RNA gene, partial sequence blastn 24963 381 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERB
22027751 22027751 PRJNA1245487_P_NODE_10838_length_359_cov_2.489510_g10500_i0 PRJNA1245487 10838 359 2.48951 8.9373409 Physarum polycephalum 5791 Evosea other_Eukaryota 339 2.3299999999999997e-88   NTclustered gi|3221|emb|V01159.1| 5791 g10500 i0 84.884 30.5766016713092 344 43 94 6 21 358 1018 1358 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 10977 339 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
22728336 22728336 PRJNA1245487_P_NODE_4318_length_603_cov_2.362264_g3988_i0 PRJNA1245487 4318 603 2.362264 14.24445192 Fuligo 159719 Evosea other_Eukaryota 198 7.25e-46   NTclustered gi|37515398|emb|AJ584697.1| 159720 g3988 i0 84.689 19.8291873963516 209 21 34 10 397 603 7841 7642 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 11957 200 0.99 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
24003396 24003396 PRJNA1245487_P_NODE_19999_length_249_cov_3.045455_g19661_i0 PRJNA1245487 19999 249 3.045455 7.58318295 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 355 1.53e-93   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g19661 i0 92.46 92.85140562249 252 14 100 4 1 249 1509 1758 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 23120 355 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
25277329 25277329 PRJNA1245487_P_NODE_11360_length_349_cov_1.692029_g11022_i0 PRJNA1245487 11360 349 1.692029 5.90518121 Cochliopodium 313557 Discosea other_Eukaryota 645 1.1899999999999993e-180   NTclustered gi|659103902|gb|KJ569713.1| 313997 g11022 i0 100 64.458452722063 349 0 100 0 1 349 1252 904 Cochliopodium minus clone 1101 18S ribosomal RNA gene, partial sequence blastn 22496 645 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
30673767 30673767 PRJNA1245487_P_NODE_20333_length_248_cov_1.337143_g19995_i0 PRJNA1245487 20333 248 1.337143 3.31611464 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.8 1.31e-9   NR XP_004338931.1 1257118 g19995 i0 47.6 1.98387096774194 82 39 94.4 3 7 240 129 210 XP_004338931.1 glutathione stransferase [Acanthamoeba castellanii str. Neff] diamond 492 62.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32350042 32350042 PRJNA1245487_P_NODE_17939_length_263_cov_1.173684_g17601_i0 PRJNA1245487 17939 263 1.173684 3.08678892 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.6 0.00206   NR XP_004338620.1 1257118 g17601 i0 38.2 0.627376425855513 55 34 62.7 0 167 3 56 110 XP_004338620.1 PQQ enzyme repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 165 46.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;