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contig_metadata

25 rows where bioproject = "PRJNA1242190" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 25 ✖

bioproject 1

  • PRJNA1242190 · 25 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1625591 1625591 PRJNA1242190_S_NODE_2502_length_473_cov_3.205000_g2495_i0 PRJNA1242190 2502 473 3.205 15.15965 Betacoronavirus pandemicum 3418604 Viruses Viruses 69.4 4.57e-7   NTclustered gi|2155043487|emb|OV016108.1| 2697049 g2495 i0 87.097 8.09302325581395 62 6 13 2 1 60 29879 29940 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 3828 69.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2326329 2326329 PRJNA1242190_S_NODE_11762_length_253_cov_1.300000_g11755_i0 PRJNA1242190 11762 253 1.3 3.289 Viruses 10239 Viruses Viruses 75 4.9e-9   NTclustered gi|2167415105|tpg|BK059322.1| 12271 g11755 i0 100 16.498023715415 40 0 16 0 201 240 40 1 TPA_asm: Arabis mosaic virus isolate SRR5788585_ArMV segment RNA1, complete sequence blastn 4174 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus arabis
2901721 2901721 PRJNA1242190_S_NODE_3163_length_438_cov_3.295890_g3156_i0 PRJNA1242190 3163 438 3.29589 14.4359982 Betacoronavirus pandemicum 3418604 Viruses Viruses 78.7 6.98e-10   NTclustered gi|2165832605|emb|OV195107.1| 2697049 g3156 i0 88.06 13.4954337899543 67 7 15 1 1 66 56 122 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 5911 78.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2901800 2901800 PRJNA1242190_S_NODE_8903_length_287_cov_5.934579_g8896_i0 PRJNA1242190 8903 287 5.934579 17.03224173 Caudoviricetes sp. 2832643 Viruses Viruses 69.4 2.64e-7   NTclustered gi|2056941685|tpg|BK022497.1| 2832643 g8896 i0 95.455 13.2822299651568 44 0 15 2 1 42 16329 16286 MAG TPA_asm: Caudoviricetes sp. isolate ctHed2, partial genome blastn 3812 69.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
6728744 6728744 PRJNA1242190_S_NODE_7366_length_312_cov_36.794979_g7359_i0 PRJNA1242190 7366 312 36.794979 114.80033448 Emesvirus zinderi 329852 Viruses Viruses 75 6.23e-9   NTclustered gi|2494998033|dbj|LC710218.1| 12022 g7359 i0 92.308 12.3589743589744 52 4 17 0 21 72 3 54 Escherichia phage MS2 GI_B RNA, complete genome blastn 3856 75 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Norzivirales Fiersviridae Emesvirus Emesvirus zinderi
8004142 8004142 PRJNA1242190_S_NODE_127_length_872_cov_9.454318_g124_i0 PRJNA1242190 127 872 9.454318 82.44165296 Betacoronavirus pandemicum 3418604 Viruses Viruses 71.3 2.43e-7   NTclustered gi|2557638132|emb|OY695180.1| 2697049 g124 i0 100 4.50573394495413 38 0 4 0 829 866 20035 20072 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3929 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9279073 9279073 PRJNA1242190_S_NODE_11788_length_253_cov_1.205556_g11781_i0 PRJNA1242190 11788 253 1.205556 3.05005668 Betacoronavirus pandemicum 3418604 Viruses Viruses 75 4.9e-9   NTclustered gi|2557649546|emb|OY678249.1| 2697049 g11781 i0 100 15.9920948616601 40 0 16 0 196 235 10400 10439 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4046 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9979102 9979102 PRJNA1242190_S_NODE_4828_length_372_cov_1.173913_g4821_i0 PRJNA1242190 4828 372 1.173913 4.36695636 Viruses 10239 Viruses Viruses 73.1 2.72e-8   NTclustered gi|2755084441|gb|PP943425.1| 10258 g4821 i0 100 12.6478494623656 39 0 10 0 332 370 67586 67624 Orf virus isolate FX10, partial genome blastn 4705 73.1 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Parapoxvirus Parapoxvirus orf
11829473 11829473 PRJNA1242190_S_NODE_13710_length_242_cov_0.923077_g13703_i0 PRJNA1242190 13710 242 0.923077 2.23384634 Betacoronavirus pandemicum 3418604 Viruses Viruses 67.6 7.78e-7   NTclustered gi|2165834600|emb|OV196107.1| 2697049 g13703 i0 97.436 16.4338842975207 39 1 16 0 197 235 316 278 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 3977 67.6 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11829574 11829574 PRJNA1242190_S_NODE_8970_length_286_cov_43.525822_g8963_i0 PRJNA1242190 8970 286 43.525822 124.48385092 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 67.6 9.44e-7   NTclustered gi|1465382783|emb|LS992247.1| 10376 g8963 i0 100 14.2447552447552 36 0 13 0 240 275 58051 58016 Human gammaherpesvirus 4 isolate Human herpesvirus 4 genome assembly, chromosome: I blastn 4074 67.6 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
13104713 13104713 PRJNA1242190_S_NODE_11211_length_258_cov_10.027027_g11204_i0 PRJNA1242190 11211 258 10.027027 25.86972966 Betacoronavirus pandemicum 3418604 Viruses Viruses 65.8 3.02e-6   NTclustered gi|2557638132|emb|OY695180.1| 2697049 g11204 i0 97.368 0.290697674418605 38 1 15 0 221 258 20035 20072 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 75 65.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14379983 14379983 PRJNA1242190_S_NODE_12192_length_251_cov_0.876404_g12185_i0 PRJNA1242190 12192 251 0.876404 2.19977404 Citrivirus citri 3427970 Viruses Viruses 69.4 2.26e-7   NTclustered gi|2453161536|dbj|LC758583.1| 129141 g12185 i0 95.455 15.593625498008 44 0 18 2 4 47 7565 7524 Citrus leaf blotch virus CNU_JC RNA, complete genome blastn 3914 69.4 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
14380074 14380074 PRJNA1242190_S_NODE_6132_length_336_cov_2.790875_g6125_i0 PRJNA1242190 6132 336 2.790875 9.37734 Betacoronavirus pandemicum 3418604 Viruses Viruses 73.1 2.43e-8   NTclustered gi|2560262177|emb|OY711604.1| 2697049 g6125 i0 95.556 11.7946428571429 45 2 13 0 291 335 21733 21777 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3963 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
15653829 15653829 PRJNA1242190_S_NODE_10953_length_261_cov_2.877660_g10946_i0 PRJNA1242190 10953 261 2.87766 7.5106926 Maltschvirus maltsch 2956182 Viruses Viruses 58.4 5.12e-4   NTclustered gi|1839179596|emb|LR796775.1| 2100421 g10946 i0 89.362 0.18007662835249 47 3 18 2 78 124 39529 39485 uncultured Caudovirales phage genome assembly blastn 47 58.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Peduoviridae Maltschvirus Maltschvirus maltsch
15653850 15653850 PRJNA1242190_S_NODE_12433_length_249_cov_1.369318_g12426_i0 PRJNA1242190 12433 249 1.369318 3.40960182 Betacoronavirus pandemicum 3418604 Viruses Viruses 76.8 1.34e-9   NTclustered gi|2850890058|emb|OV101343.1| 2697049 g12426 i0 95.745 17.5381526104418 47 2 19 0 3 49 21803 21757 Severe acute respiratory syndrome coronavirus 2 isolate 1 genome assembly, chromosome: 1 blastn 4367 76.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16928112 16928112 PRJNA1242190_S_NODE_3234_length_435_cov_2.337017_g3227_i0 PRJNA1242190 3234 435 2.337017 10.16602395 Betacoronavirus pandemicum 3418604 Viruses Viruses 67.6 1.5e-6   NTclustered gi|2557638132|emb|OY695180.1| 2697049 g3227 i0 95.349 8.80459770114943 43 1 10 1 9 50 20067 20025 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3830 67.6 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
17628784 17628784 PRJNA1242190_S_NODE_13814_length_239_cov_2.740964_g13807_i0 PRJNA1242190 13814 239 2.740964 6.55090396 Viruses 10239 Viruses Viruses 69.4 2.13e-7   NTclustered gi|1549120429|gb|MK249308.1| 2500149 g13807 i0 93.617 18.0753138075314 47 1 20 1 187 233 74 30 Salmonella phage TS13, complete genome blastn 4320 69.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Casjensviridae Chivirus Chivirus iEPS5
18202635 18202635 PRJNA1242190_S_NODE_5135_length_362_cov_2.013841_g5128_i0 PRJNA1242190 5135 362 2.013841 7.29010442 Betacoronavirus pandemicum 3418604 Viruses Viruses 75 7.33e-9   NTclustered gi|2557649546|emb|OY678249.1| 2697049 g5128 i0 100 11.7099447513812 40 0 11 0 2 41 10439 10400 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4239 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
19476949 19476949 PRJNA1242190_S_NODE_12476_length_249_cov_0.886364_g12469_i0 PRJNA1242190 12476 249 0.886364 2.20704636 Betacoronavirus pandemicum 3418604 Viruses Viruses 73.1 1.73e-8   NTclustered gi|2165832605|emb|OV195107.1| 2697049 g12469 i0 87.5 18.4658634538153 64 7 26 1 2 65 57 119 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4598 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21452819 21452819 PRJNA1242190_S_NODE_17_length_1280_cov_19.278376_g16_i0 PRJNA1242190 17 1280 19.278376 246.7632128 Viruses 10239 Viruses Viruses 69.4 1.3e-6   NTclustered gi|2560502367|emb|OY629453.1| 2697049 g16 i0 100 3.27421875 37 0 3 0 1242 1278 5919 5955 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4191 69.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23303349 23303349 PRJNA1242190_S_NODE_8719_length_290_cov_2.000000_g8712_i0 PRJNA1242190 8719 290 2 5.8 Diaporthe negative-stranded RNA virus 1 3035782 Viruses Viruses 63.9 1.24e-5   NTclustered gi|2554174728|gb|OQ808567.1| 3035782 g8712 i0 97.368 14.0689655172414 38 0 13 1 244 280 9306 9343 Diaporthe negative-stranded RNA virus 1 isolate SO4 9A, complete genome blastn 4080 63.9 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Mymonaviridae   Diaporthe negative-stranded RNA virus 1
24003083 24003083 PRJNA1242190_S_NODE_5119_length_362_cov_4.899654_g5112_i0 PRJNA1242190 5119 362 4.899654 17.73674748 Viruses 10239 Viruses Viruses 67.6 1.23e-6   NTclustered gi|2494998033|dbj|LC710218.1| 12022 g5112 i0 100 11.2099447513812 36 0 10 0 8 43 17 52 Escherichia phage MS2 GI_B RNA, complete genome blastn 4058 67.6 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Norzivirales Fiersviridae Emesvirus Emesvirus zinderi
24577201 24577201 PRJNA1242190_S_NODE_3100_length_441_cov_6.586957_g3093_i0 PRJNA1242190 3100 441 6.586957 29.04848037 Caudoviricetes sp. 2832643 Viruses Viruses 67.6 1.52e-6   NTclustered gi|2059855482|tpg|BK040575.1| 2832643 g3093 i0 93.478 8.68253968253968 46 2 10 1 1 46 4 48 MAG TPA_asm: Caudoviricetes sp. isolate ctwIV1, partial genome blastn 3829 67.6 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
24577244 24577244 PRJNA1242190_S_NODE_7100_length_317_cov_1.844262_g7093_i0 PRJNA1242190 7100 317 1.844262 5.84631054 Bacillus phage vB_BthP-HD73phi 2500580 Viruses Viruses 75 6.34e-9   NTclustered gi|1549120968|gb|MK310228.1| 2500580 g7093 i0 97.674 12.8864353312303 43 1 14 0 11 53 36 78 Bacillus phage vB_BthP-HD73phi, complete genome blastn 4085 75 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Salasmaviridae Claudivirus Bacillus phage vB_BthP-HD73phi
24577276 24577276 PRJNA1242190_S_NODE_9220_length_283_cov_1.590476_g9213_i0 PRJNA1242190 9220 283 1.590476 4.50104708 Betacoronavirus pandemicum 3418604 Viruses Viruses 63.9 1.21e-5   NTclustered gi|2524352013|emb|OY072335.1| 2697049 g9213 i0 100 12.7844522968198 34 0 12 0 250 283 21655 21688 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 3618 63.9 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;