RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1242190" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1242190 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20177263 20177263 PRJNA1242190_S_NODE_7056_length_318_cov_1.481633_g7049_i0 PRJNA1242190 7056 318 1.481633 4.71159294 Pseudomonadati 3379134 Bacteria Bacteria 588 1.84e-163   NTclustered gi|1226876681|gb|CP022559.1| 197 g7049 i0 100 100 318 0 100 0 1 318 701430 701747 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 31800 588 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
23303229 23303229 PRJNA1242190_S_NODE_10339_length_269_cov_1.193878_g10332_i0 PRJNA1242190 10339 269 1.193878 3.21153182 Helicobacter pylori 210 Bacteria Bacteria 73.1 1.89e-8   NTclustered gi|2222028449|gb|CP094103.1| 210 g10332 i0 100 16.1078066914498 39 0 14 0 8 46 1292685 1292723 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 4333 73.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
24003030 24003030 PRJNA1242190_S_NODE_1999_length_506_cov_11.124711_g1992_i0 PRJNA1242190 1999 506 11.124711 56.29103766 root 1 Root_unresolved Root_unresolved 67.6 1.77e-6   NTclustered gi|2222028449|gb|CP094103.1| 210 g1992 i0 93.478 7.43083003952569 46 1 9 2 438 482 1292718 1292674 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 3760 67.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;