RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1242190", tax_kingdom = "Bacillati" and tax_phylum = "Bacillota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA1242190 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21452961 21452961 PRJNA1242190_S_NODE_9417_length_281_cov_0.894231_g9410_i0 PRJNA1242190 9417 281 0.894231 2.51278911 root 1 Root_unresolved Root_unresolved 479 9.999999999999999e-131   NTclustered gi|1796975023|gb|CP033086.1| 1280 g9410 i0 99.245 93.8362989323843 265 2 94 0 17 281 2463340 2463604 Staphylococcus aureus strain WH9628 chromosome blastn 26368 479 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
26978629 26978629 PRJNA1242190_S_NODE_3242_length_435_cov_1.569061_g3235_i0 PRJNA1242190 3242 435 1.569061 6.82541535 Brevibacillus fulvus 1125967 Bacteria Bacteria 144 2.31e-41   NR WP_204516782.1 1125967 g3235 i0 61.1 4.76551724137931 113 44 77.9 0 393 55 2 114 WP_204516782.1 group I truncated hemoglobin [Brevibacillus fulvus] diamond 2073 144 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Brevibacillus Brevibacillus fulvus
30723518 30723518 PRJNA1242190_S_NODE_6954_length_320_cov_1.271255_g6947_i0 PRJNA1242190 6954 320 1.271255 4.068016 Bacillota 1239 Bacteria Bacteria 78.6 4.21e-16   NR WP_034562085.1 2749 g6947 i0 66.7 8.625 51 17 47.8 0 135 287 73 123 WP_034562085.1 RidA family protein [Carnobacterium gallinarum] diamond 2760 79 0.994936708860759 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium gallinarum
32526522 32526522 PRJNA1242190_S_NODE_6099_length_337_cov_1.693182_g6092_i0 PRJNA1242190 6099 337 1.693182 5.70602334 Paenibacillus 44249 Bacteria Bacteria 137 3.99e-39   NR MCG0239086.1 1879010 g6092 i0 62.7 2.70623145400593 102 38 90.8 0 24 329 5 106 MCG0239086.1 group 1 truncated hemoglobin [Bacillota bacterium] diamond 912 137 1 Bacteria   Bacillati Bacillota         Bacillota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;